Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / brownbiomechanics/slicerautoscoperm issues and pull requests

#144 - Extract pertinent calibration parameters from dsx xml

Issue - State: open - Opened by amymmorton 11 days ago
Labels: dsx

#143 - Add 3DHierarchical Reg instructions to readthe docs

Issue - State: closed - Opened by amymmorton 12 days ago - 1 comment
Labels: documentation

#141 - WIP: Improve BVR config generation UI

Pull Request - State: open - Opened by sbelsk 13 days ago

#140 - BUG: Remove obsolete VRG Generation functionality

Pull Request - State: open - Opened by sbelsk 13 days ago

#138 - Upload pre-processing sample data

Issue - State: open - Opened by amymmorton 19 days ago

#136 - pop up or permanent key commands visable

Issue - State: open - Opened by amymmorton 22 days ago
Labels: enhancement

#135 - Facilitate volume node generation at a set homogenous density for partial volume gen

Issue - State: open - Opened by amymmorton 22 days ago
Labels: enhancement, dsx

#133 - Load single bone.tfm instead of scale and translation separate

Issue - State: open - Opened by amymmorton 26 days ago
Labels: enhancement, high priority

#132 - Remove obsolete collapsible group box related "VRG generation"

Issue - State: open - Opened by jcfr 26 days ago - 3 comments

#131 - Improve PreProcessing workflow to support BVR cfg generation

Issue - State: open - Opened by jcfr 26 days ago - 7 comments

#128 - BUG: Fix wrong transformation layers applied to generated PVs

Pull Request - State: closed - Opened by sbelsk about 1 month ago - 3 comments

#127 - BUG: Fix off-by-one bug in end frame for 3D registration

Pull Request - State: open - Opened by sbelsk about 1 month ago - 1 comment

#126 - BUG: Remove irrelevant dialog before partial volume generation

Pull Request - State: closed - Opened by sbelsk about 1 month ago - 1 comment

#125 - Partial Volumes Generated do not spatially align with VolumeNode Input

Issue - State: open - Opened by amymmorton about 1 month ago - 6 comments
Labels: high priority

#124 - Remove obsolete prompt displayed when generating Partial Volumes

Issue - State: closed - Opened by amymmorton about 1 month ago - 2 comments
Labels: enhancement

#123 - Toggle CASTTiff fx greyscale ON/OFF

Issue - State: closed - Opened by amymmorton about 1 month ago - 1 comment

#122 - Marketing video for SAM

Issue - State: open - Opened by bpaniagua about 2 months ago

#121 - Hierarchical approach to 3d registration (Regression hunting)

Pull Request - State: closed - Opened by jcfr about 2 months ago - 3 comments

#120 - cuda build issues

Issue - State: closed - Opened by amymmorton about 2 months ago
Labels: bug

#119 - 3DCT/4DCT

Issue - State: closed - Opened by amymmorton 2 months ago

#118 - Add documentation related to 3D registration

Issue - State: open - Opened by amymmorton 2 months ago - 1 comment
Labels: documentation

#117 - SSL certificate issue: inner dependency clone of Autoscoper

Issue - State: closed - Opened by amymmorton 2 months ago - 2 comments

#116 - ENH: Update Autoscoper

Pull Request - State: closed - Opened by jcfr 3 months ago

#114 - BUG: Remove secondary call to segmentation generation

Pull Request - State: closed - Opened by NicerNewerCar 4 months ago

#113 - Transformation Update

Pull Request - State: closed - Opened by NicerNewerCar 4 months ago - 5 comments

#111 - WIP: Threadpool Bug

Pull Request - State: open - Opened by NicerNewerCar 5 months ago

#110 - Ground truth `.dat` files for testing

Issue - State: open - Opened by amymmorton 5 months ago - 1 comment
Labels: documentation

#109 - ENH: Improve and export Slicer2AUT transform

Pull Request - State: closed - Opened by NicerNewerCar 5 months ago

#108 - ENH: Reorganize the pre-processing UI and add PV confirmation

Pull Request - State: closed - Opened by NicerNewerCar 5 months ago - 2 comments

#107 - Auto generated tra offset from correct projection

Issue - State: closed - Opened by amymmorton 5 months ago - 7 comments

#106 - BUG: Fix 4DCT vrg pipeline not properly centering sequences

Pull Request - State: closed - Opened by NicerNewerCar 5 months ago - 4 comments

#105 - Automatic camera placement for 4DCT

Issue - State: closed - Opened by vforcesar 5 months ago - 2 comments

#104 - ENH: Support importing pre-existing cameras in automatic VRG generation

Pull Request - State: closed - Opened by jcfr 5 months ago - 6 comments

#103 - partial volumes - reoriented from expected....

Issue - State: closed - Opened by amymmorton 6 months ago - 2 comments

#102 - tra seem to be wrt dicom origin rather than 'autoscoper' origin

Issue - State: closed - Opened by amymmorton 6 months ago - 8 comments

#101 - Import existing cameras for vrg gen

Issue - State: closed - Opened by amymmorton 6 months ago - 3 comments
Labels: wontfix

#100 - Remove general volume and sequence input in favor of independent inputs

Issue - State: open - Opened by NicerNewerCar 6 months ago
Labels: enhancement

#99 - ENH: Hierarchical approach to 3d registration

Pull Request - State: closed - Opened by NicerNewerCar 6 months ago - 5 comments

#98 - ENH: More verbose failure and success notifications

Pull Request - State: closed - Opened by NicerNewerCar 6 months ago - 1 comment

#97 - ENH: Output TRA files on PV gen

Pull Request - State: closed - Opened by NicerNewerCar 6 months ago - 1 comment

#96 - BUG: Fix issues with VRG pipeline

Pull Request - State: closed - Opened by NicerNewerCar 6 months ago

#95 - Address VTK warnings during VRG gen pipeline

Issue - State: open - Opened by NicerNewerCar 6 months ago - 1 comment

#94 - hierarchical 'marionette' transform application for sequential frames

Issue - State: closed - Opened by amymmorton 6 months ago - 1 comment
Labels: enhancement

#93 - apply .tfm of partial volumes on launch

Issue - State: closed - Opened by amymmorton 6 months ago - 3 comments
Labels: enhancement

#92 - progress bar- success or failure feedback request

Issue - State: closed - Opened by amymmorton 6 months ago
Labels: enhancement

#91 - vrg generation fail (50%)

Issue - State: closed - Opened by amymmorton 6 months ago

#90 - Update Autoscoper

Pull Request - State: closed - Opened by NicerNewerCar 8 months ago

#89 - DOC: Remove redundant sphinx directives duplicating type annotations

Pull Request - State: closed - Opened by jcfr 8 months ago

#88 - Update Autoscoper

Pull Request - State: closed - Opened by jcfr 8 months ago

#87 - Update Autoscoper

Pull Request - State: closed - Opened by jcfr 9 months ago

#86 - COMP: Fix Linux build with Autoscoper CUDA backend enabled

Pull Request - State: closed - Opened by jcfr 9 months ago

#85 - 3dct - sequences camera projection, error

Issue - State: closed - Opened by amymmorton 9 months ago - 6 comments
Labels: bug

#84 - 3dct - Seq nodes VRG output: incremented filenames- rather than series name

Issue - State: closed - Opened by amymmorton 9 months ago - 4 comments
Labels: enhancement

#83 - 3dct- on Generate Config: Err: Sequence Node -no attribute GetSpacing

Issue - State: closed - Opened by amymmorton 9 months ago
Labels: bug

#82 - ENH: Update Autoscoper with Quaternion support

Pull Request - State: closed - Opened by jcfr 9 months ago

#81 - ENH: Update Autoscoper modernizing CUDA integration

Pull Request - State: closed - Opened by jcfr 9 months ago - 3 comments

#80 - ENH: Update Autoscoper

Pull Request - State: closed - Opened by NicerNewerCar 10 months ago

#78 - ENH: Rename output directory from VRG to RadiographImages

Pull Request - State: closed - Opened by NicerNewerCar 10 months ago

#77 - modify output directory name (VRG to RadiographImages)

Issue - State: closed - Opened by amymmorton 10 months ago
Labels: bug

#76 - ENH: Update Autoscoper

Pull Request - State: closed - Opened by jcfr 10 months ago

#75 - 4DCT / Sequential 3DCT

Pull Request - State: closed - Opened by NicerNewerCar 11 months ago - 18 comments

#73 - Support integrating backend-specific Autoscoper executable & enable CUDA backend

Pull Request - State: closed - Opened by jcfr 12 months ago - 5 comments

#73 - Support integrating backend-specific Autoscoper executable & enable CUDA backend

Pull Request - State: closed - Opened by jcfr 12 months ago - 5 comments

#72 - BUG: Update Autoscoper to fix seeding of random number generator

Pull Request - State: closed - Opened by jcfr 12 months ago

#71 - MacOS Testing

Issue - State: open - Opened by bpaniagua 12 months ago - 4 comments

#70 - BUG: Update Autoscoper to include DRR projection fixes

Pull Request - State: closed - Opened by jcfr about 1 year ago

#69 - PERF: Update Autoscoper to include PSO optimization

Pull Request - State: closed - Opened by jcfr about 1 year ago

#68 - Improve reading and writing of partial volumes

Pull Request - State: closed - Opened by NicerNewerCar about 1 year ago - 2 comments

#67 - ENH: Update Autoscoper with various enhancements and fixes

Pull Request - State: closed - Opened by jcfr about 1 year ago

#65 - COMP: Revisit initialization of Autoscoper_RENDERING_BACKEND

Pull Request - State: closed - Opened by jcfr about 1 year ago - 1 comment

#64 - ENH: Enable CUDA on Windows and Linux

Pull Request - State: closed - Opened by NicerNewerCar about 1 year ago

#63 - Name Mismatch - Parital Volume outputfolder

Issue - State: closed - Opened by amymmorton about 1 year ago - 4 comments

#62 - Package the MATLAB socket control lib as part of extension

Issue - State: open - Opened by NicerNewerCar about 1 year ago - 1 comment

#61 - VRG- output tiff not associated with trial name

Issue - State: closed - Opened by amymmorton about 1 year ago - 2 comments

#59 - VRG - multiple series generated for a given camera placement

Issue - State: closed - Opened by amymmorton about 1 year ago - 4 comments

#58 - 4dct

Pull Request - State: closed - Opened by NicerNewerCar about 1 year ago - 1 comment

#57 - OpenCL OpenGL Error -1000

Issue - State: closed - Opened by NicerNewerCar about 1 year ago - 7 comments

#56 - Transform Voxel Size Mismatch

Issue - State: closed - Opened by jdholt04 about 1 year ago - 5 comments

#55 - CLI Node Improvements

Issue - State: open - Opened by NicerNewerCar about 1 year ago

#54 - ENH: Update version of Autoscoper to include fixes for OpenCL and linux

Pull Request - State: closed - Opened by NicerNewerCar about 1 year ago - 1 comment

#53 - Virtual Radiograph Generation Module

Pull Request - State: closed - Opened by NicerNewerCar over 1 year ago - 13 comments

#52 - BUG: Fix VTK memory leak in partial volume gen

Pull Request - State: closed - Opened by NicerNewerCar over 1 year ago
Labels: bug

#51 - BUG: Ensure dependent extensions are installed automatically

Pull Request - State: closed - Opened by jcfr over 1 year ago - 1 comment

#49 - Improve error checking connect to autoscoper

Pull Request - State: closed - Opened by jcfr over 1 year ago - 1 comment

#48 - ENH: Improve API renaming "onApplyButton" to "lookupAndStartAutoscoper"

Pull Request - State: closed - Opened by jcfr over 1 year ago - 1 comment

#47 - BUG: Ensure downloaded sample data archives are reused if checksum match

Pull Request - State: closed - Opened by jcfr over 1 year ago