Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / broadinstitute/warp issues and pull requests
#1454 - Bump jinja2 from 3.1.4 to 3.1.5 in /verification/test-wdls/scripts
Pull Request -
State: open - Opened by dependabot[bot] about 1 month ago
- 1 comment
Labels: dependencies, python
#1453 - Np jw test illumina genotyping arrays
Pull Request -
State: open - Opened by nikellepetrillo about 1 month ago
- 42 comments
#1452 - Np jw test illumina genotyping arrays
Pull Request -
State: closed - Opened by nikellepetrillo about 1 month ago
- 3 comments
#1451 - Np jw test illumina genotyping arrays
Pull Request -
State: closed - Opened by nikellepetrillo about 1 month ago
- 78 comments
#1450 - Fk build indices marmoset
Pull Request -
State: open - Opened by khajoue2 about 1 month ago
- 3 comments
#1449 - Bump nanoid from 3.3.6 to 3.3.8 in /website
Pull Request -
State: open - Opened by dependabot[bot] about 1 month ago
- 1 comment
Labels: dependencies, javascript
#1448 - Update HaplotypeCaller_GATK4_VCF to use MEM_SIZE and MEM_UNIT
Pull Request -
State: open - Opened by kshakir about 2 months ago
- 1 comment
#1447 - staging --> master
Pull Request -
State: closed - Opened by ekiernan about 2 months ago
- 8 comments
#1446 - add cellbender to optimus
Pull Request -
State: closed - Opened by nikellepetrillo about 2 months ago
- 18 comments
#1445 - Addressing changelog check error
Pull Request -
State: open - Opened by jessicaway about 2 months ago
- 3 comments
#1444 - dev -> staging
Pull Request -
State: closed - Opened by nikellepetrillo about 2 months ago
- 6 comments
#1443 - Update output names for ReblockGVCF
Pull Request -
State: open - Opened by jessicaway about 2 months ago
- 21 comments
#1442 - Np ek fix uniform matrix starsolofastq
Pull Request -
State: closed - Opened by nikellepetrillo about 2 months ago
- 15 comments
#1441 - Pd 2804 rc
Pull Request -
State: closed - Opened by rsc3 about 2 months ago
- 27 comments
#1440 - PD-2757: Add Optimus as first task to the Slidetag WDL
Pull Request -
State: open - Opened by aawdeh about 2 months ago
- 52 comments
#1439 - Regenie4 noqc
Pull Request -
State: closed - Opened by shengqh about 2 months ago
- 2 comments
#1438 - Np new branch 2
Pull Request -
State: closed - Opened by nikellepetrillo about 2 months ago
- 3 comments
#1437 - PD-2800: Add filtered option as output to MergeStarOutput task
Pull Request -
State: open - Opened by aawdeh 2 months ago
- 9 comments
#1436 - Np new branch 1
Pull Request -
State: closed - Opened by nikellepetrillo 2 months ago
- 3 comments
#1435 - Np add metadata.txt file to build indices
Pull Request -
State: closed - Opened by nikellepetrillo 2 months ago
- 10 comments
#1434 - add set -e -o pipefail to all relevant imputation tasks
Pull Request -
State: closed - Opened by jsotobroad 2 months ago
#1433 - Np jw test illumina genotyping arrays 2
Pull Request -
State: closed - Opened by nikellepetrillo 2 months ago
- 6 comments
#1432 - Np jw test illumina genotyping arrays 1
Pull Request -
State: closed - Opened by nikellepetrillo 2 months ago
- 21 comments
#1431 - PD-2803: Fixing Optimus h5ad generation to handle gene_ids more flexibly
Pull Request -
State: closed - Opened by ekiernan 2 months ago
- 27 comments
#1430 - Bump cross-spawn from 7.0.3 to 7.0.6 in /website
Pull Request -
State: open - Opened by dependabot[bot] 2 months ago
- 1 comment
Labels: dependencies, javascript
#1429 - testing pr - Np jw test illumina genotyping arrays
Pull Request -
State: closed - Opened by nikellepetrillo 2 months ago
- 457 comments
Labels: DO NOT MERGE
#1428 - Np starsolo fails silently when it runs out of disk
Pull Request -
State: closed - Opened by nikellepetrillo 2 months ago
- 15 comments
#1428 - Np starsolo fails silently when it runs out of disk
Pull Request -
State: closed - Opened by nikellepetrillo 2 months ago
- 15 comments
#1427 - Bump braces from 3.0.2 to 3.0.3 in /website
Pull Request -
State: open - Opened by dependabot[bot] 2 months ago
- 1 comment
Labels: dependencies, javascript
#1427 - Bump braces from 3.0.2 to 3.0.3 in /website
Pull Request -
State: open - Opened by dependabot[bot] 2 months ago
- 1 comment
Labels: dependencies, javascript
#1426 - Bump jinja2 from 3.1.3 to 3.1.4 in /verification/test-wdls/scripts
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
- 5 comments
Labels: dependencies, python
#1426 - Bump jinja2 from 3.1.3 to 3.1.4 in /verification/test-wdls/scripts
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
- 5 comments
Labels: dependencies, python
#1425 - add array imputation quota consumed wdl
Pull Request -
State: closed - Opened by jsotobroad 2 months ago
#1425 - add array imputation quota consumed wdl
Pull Request -
State: closed - Opened by jsotobroad 2 months ago
#1424 - Bump webpack from 5.88.1 to 5.96.1 in /website
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
- 4 comments
Labels: dependencies, javascript
#1424 - Bump webpack from 5.88.1 to 5.96.1 in /website
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
- 4 comments
Labels: dependencies, javascript
#1423 - Update snM3C README.md
Pull Request -
State: closed - Opened by jessicaway 2 months ago
- 6 comments
#1422 - staging --> master
Pull Request -
State: closed - Opened by ekiernan 2 months ago
- 4 comments
#1422 - staging --> master
Pull Request -
State: closed - Opened by ekiernan 2 months ago
- 4 comments
#1421 - dev --> staging
Pull Request -
State: closed - Opened by ekiernan 2 months ago
- 3 comments
#1421 - dev --> staging
Pull Request -
State: closed - Opened by ekiernan 2 months ago
- 3 comments
#1420 - adding memory for parsebarcodes and joinbarcodes
Pull Request -
State: closed - Opened by ekiernan 2 months ago
- 15 comments
#1420 - adding memory for parsebarcodes and joinbarcodes
Pull Request -
State: closed - Opened by ekiernan 2 months ago
- 15 comments
#1419 - Lk atac percent target
Pull Request -
State: closed - Opened by ekiernan 2 months ago
- 9 comments
#1418 - TSPS-344 Use dynamic memory/cpu for beagle phasing and imputation
Pull Request -
State: closed - Opened by jsotobroad 3 months ago
- 1 comment
#1417 - Provide public WholeGenomeGermlineSingleSample input files
Issue -
State: closed - Opened by johnbradley 3 months ago
- 1 comment
#1417 - Provide public WholeGenomeGermlineSingleSample input files
Issue -
State: closed - Opened by johnbradley 3 months ago
- 1 comment
#1416 - Update ComareH5adFilesGEX
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 9 comments
#1416 - Update ComareH5adFilesGEX
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 9 comments
#1415 - Necessity to Sort Bam
Issue -
State: open - Opened by eprdz 3 months ago
- 1 comment
#1415 - Necessity to Sort Bam
Issue -
State: open - Opened by eprdz 3 months ago
- 1 comment
#1414 - Staging -> master
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 4 comments
#1414 - Staging -> master
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 4 comments
#1413 - dev -> staging
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 3 comments
#1413 - dev -> staging
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 3 comments
#1412 - PD-2779: Add README file for CEMBA file path deprecation
Pull Request -
State: closed - Opened by aawdeh 3 months ago
- 12 comments
#1411 - dev --> staging
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 3 comments
#1411 - dev --> staging
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 3 comments
#1410 - Lk fix parse barcodes and join barcodes
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 22 comments
#1410 - Lk fix parse barcodes and join barcodes
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 22 comments
#1409 - Np nondeterminism atac lib metrics
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 28 comments
#1409 - Np nondeterminism atac lib metrics
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 28 comments
#1408 - staging --> master
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 6 comments
#1408 - staging --> master
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 6 comments
#1407 - dev --> staging
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 3 comments
#1406 - Np address nondeterminism in atac library metrics
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 6 comments
#1405 - Np update gatk 4.6.1.0 revert bqsr and validate chip
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 23 comments
#1405 - Np update gatk 4.6.1.0 revert bqsr and validate chip
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 23 comments
#1404 - Lk add bgzip
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 9 comments
#1404 - Lk add bgzip
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 9 comments
#1403 - gatk docker update 4.6.1.0
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 12 comments
#1402 - PD-2759 Add positioning task to Slide-tags WDL
Pull Request -
State: closed - Opened by aawdeh 3 months ago
- 27 comments
#1402 - PD-2759 Add positioning task to Slide-tags WDL
Pull Request -
State: closed - Opened by aawdeh 3 months ago
- 27 comments
#1401 - Bump http-proxy-middleware from 2.0.6 to 2.0.7 in /website
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
- 4 comments
Labels: dependencies, javascript
#1400 - Reducing memory required for ValidateVCF in Reblock pipeline
Pull Request -
State: closed - Opened by meganshand 3 months ago
- 13 comments
#1399 - Update to released version of GATK for VCF Comparator in tests
Pull Request -
State: closed - Opened by meganshand 3 months ago
- 14 comments
#1399 - Update to released version of GATK for VCF Comparator in tests
Pull Request -
State: closed - Opened by meganshand 3 months ago
- 14 comments
#1398 - Lk pd 2786 add atac expectedcells
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 19 comments
#1398 - Lk pd 2786 add atac expectedcells
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 19 comments
#1397 - Fix join barcode step for Opossum
Pull Request -
State: closed - Opened by khajoue2 3 months ago
- 48 comments
#1397 - Fix join barcode step for Opossum
Pull Request -
State: closed - Opened by khajoue2 3 months ago
- 48 comments
#1396 - staging --> master
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 3 comments
#1395 - dev --> staging
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 3 comments
#1395 - dev --> staging
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 3 comments
#1394 - Adding STAR aligner metrics and snm3c diagram
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 12 comments
#1394 - Adding STAR aligner metrics and snm3c diagram
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 12 comments
#1393 - removed underscore from NHashID key
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 19 comments
#1393 - removed underscore from NHashID key
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 19 comments
#1392 - TSPS-343 reduce imputation beagle chunkOverlaps to 2MB from 5MB
Pull Request -
State: closed - Opened by jsotobroad 3 months ago
- 1 comment
#1392 - TSPS-343 reduce imputation beagle chunkOverlaps to 2MB from 5MB
Pull Request -
State: closed - Opened by jsotobroad 3 months ago
- 1 comment
#1391 - PD-2739 Add peakcalling to Multiome ATAC subpipeline
Pull Request -
State: open - Opened by aawdeh 3 months ago
- 108 comments
Labels: DO NOT MERGE
#1390 - Bump webpack from 5.88.1 to 5.95.0 in /website
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
- 2 comments
Labels: dependencies, javascript
#1389 - Bump express from 4.18.2 to 4.21.1 in /website
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
- 4 comments
Labels: dependencies, javascript
#1388 - Bump micromatch from 4.0.4 to 4.0.8 in /website
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
- 5 comments
Labels: dependencies, javascript
#1388 - Bump micromatch from 4.0.4 to 4.0.8 in /website
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
- 5 comments
Labels: dependencies, javascript
#1387 - adding new verification test
Pull Request -
State: closed - Opened by ekiernan 3 months ago
- 41 comments
#1386 - Np deprecate cemba
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 12 comments
#1385 - Np add testing for atac lib metrics
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 13 comments
#1385 - Np add testing for atac lib metrics
Pull Request -
State: closed - Opened by nikellepetrillo 3 months ago
- 13 comments
#1384 - dev --> staging
Pull Request -
State: closed - Opened by ekiernan 4 months ago
- 3 comments