Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / broadinstitute/tag-public issues and pull requests

#76 - Whole genome germline single sample

Pull Request - State: open - Opened by stellaning1120 3 months ago

#76 - Whole genome germline single sample

Pull Request - State: open - Opened by stellaning1120 3 months ago

#75 - GDC realignment

Pull Request - State: open - Opened by stellaning1120 3 months ago

#75 - GDC realignment

Pull Request - State: open - Opened by stellaning1120 3 months ago

#74 - Fixing breakmer to work with TDR BAMs

Pull Request - State: closed - Opened by MicahR-Y 4 months ago

#74 - Fixing breakmer to work with TDR BAMs

Pull Request - State: closed - Opened by MicahR-Y 4 months ago

#73 - Adding files to Callability Analysis

Pull Request - State: closed - Opened by stellaning1120 4 months ago

#73 - Adding files to Callability Analysis

Pull Request - State: closed - Opened by stellaning1120 4 months ago

#72 - Adding Files for Callability Analysis WDL

Pull Request - State: closed - Opened by stellaning1120 4 months ago

#72 - Adding Files for Callability Analysis WDL

Pull Request - State: closed - Opened by stellaning1120 4 months ago

#71 - CODEC Duplexes end trimming

Issue - State: closed - Opened by AzeetN 4 months ago - 1 comment

#71 - CODEC Duplexes end trimming

Issue - State: closed - Opened by AzeetN 4 months ago - 1 comment

#70 - Callability analysis

Pull Request - State: closed - Opened by yueyaog 4 months ago

#70 - Callability analysis

Pull Request - State: closed - Opened by yueyaog 4 months ago

#69 - CNV Profiler WDL

Pull Request - State: open - Opened by yueyaog 4 months ago

#69 - CNV Profiler WDL

Pull Request - State: open - Opened by yueyaog 4 months ago

#68 - Callability analysis

Pull Request - State: closed - Opened by stellaning1120 5 months ago

#68 - Callability analysis

Pull Request - State: closed - Opened by stellaning1120 5 months ago

#67 - Callability analysis

Pull Request - State: closed - Opened by stellaning1120 5 months ago

#67 - Callability analysis

Pull Request - State: closed - Opened by stellaning1120 5 months ago

#66 - Submitting PR for bwa for dragen duplex

Pull Request - State: open - Opened by MicahR-Y 5 months ago

#66 - Submitting PR for bwa for dragen duplex

Pull Request - State: open - Opened by MicahR-Y 5 months ago

#65 - Adding files for TCap wdl

Pull Request - State: open - Opened by MicahR-Y 6 months ago - 1 comment

#65 - Adding files for TCap wdl

Pull Request - State: open - Opened by MicahR-Y 6 months ago - 1 comment

#64 - add files for Peddy analysis pipeline

Pull Request - State: closed - Opened by stellaning1120 6 months ago - 3 comments

#64 - add files for Peddy analysis pipeline

Pull Request - State: closed - Opened by stellaning1120 6 months ago - 3 comments

#63 - Adding files for Peddy analysis

Pull Request - State: closed - Opened by stellaning1120 6 months ago - 1 comment

#63 - Adding files for Peddy analysis

Pull Request - State: closed - Opened by stellaning1120 6 months ago - 1 comment

#62 - Cramtobam WDL Update

Pull Request - State: open - Opened by Patrick-Schlaeger-Broad 7 months ago - 4 comments

#62 - Cramtobam WDL Update

Pull Request - State: open - Opened by Patrick-Schlaeger-Broad 7 months ago - 4 comments

#61 - Array prober WDL

Pull Request - State: closed - Opened by yueyaog 7 months ago

#60 - CrosscheckFP WDL

Pull Request - State: open - Opened by yueyaog 7 months ago

#60 - CrosscheckFP WDL

Pull Request - State: open - Opened by yueyaog 7 months ago

#59 - CoverageProfiler

Pull Request - State: open - Opened by yueyaog 8 months ago - 1 comment

#59 - CoverageProfiler

Pull Request - State: open - Opened by yueyaog 8 months ago - 1 comment

#58 - Bug Fix and Add An Additional Output to Mop WDL

Pull Request - State: closed - Opened by yueyaog 9 months ago

#58 - Bug Fix and Add An Additional Output to Mop WDL

Pull Request - State: closed - Opened by yueyaog 9 months ago

#57 - Quicviz v0.4.2 WDL Update

Pull Request - State: closed - Opened by yueyaog 9 months ago

#56 - Quicviz yg

Pull Request - State: closed - Opened by yueyaog 10 months ago

#56 - Quicviz yg

Pull Request - State: closed - Opened by yueyaog 10 months ago

#55 - TAG MOP Workflows

Pull Request - State: closed - Opened by yueyaog 10 months ago

#55 - TAG MOP Workflows

Pull Request - State: closed - Opened by yueyaog 10 months ago

#54 - CNV Clinical Eval Pipeline

Pull Request - State: open - Opened by yueyaog 10 months ago

#54 - CNV Clinical Eval Pipeline

Pull Request - State: open - Opened by yueyaog 10 months ago

#53 - Adding SvABA annotation to TAG-public

Pull Request - State: open - Opened by MicahR-Y 11 months ago

#53 - Adding SvABA annotation to TAG-public

Pull Request - State: open - Opened by MicahR-Y 11 months ago

#52 - Update SC_Plate_QC.wdl to include space in runtime memory

Pull Request - State: closed - Opened by lfleming1022 about 1 year ago

#52 - Update SC_Plate_QC.wdl to include space in runtime memory

Pull Request - State: closed - Opened by lfleming1022 about 1 year ago

#51 - Adding space to runtime mem

Pull Request - State: closed - Opened by lfleming1022 about 1 year ago

#51 - Adding space to runtime mem

Pull Request - State: closed - Opened by lfleming1022 about 1 year ago

#50 - fix memory syntax

Pull Request - State: closed - Opened by stellaning1120 about 1 year ago

#50 - fix memory syntax

Pull Request - State: closed - Opened by stellaning1120 about 1 year ago

#49 - adding files for CODEC pipeline

Pull Request - State: open - Opened by stellaning1120 about 1 year ago

#49 - adding files for CODEC pipeline

Pull Request - State: open - Opened by stellaning1120 about 1 year ago

#48 - submitting the neovax files for dockstore

Pull Request - State: open - Opened by MicahR-Y about 1 year ago

#48 - submitting the neovax files for dockstore

Pull Request - State: open - Opened by MicahR-Y about 1 year ago

#47 - Added official json that can run on Terra

Pull Request - State: open - Opened by yueyaog about 1 year ago

#47 - Added official json that can run on Terra

Pull Request - State: open - Opened by yueyaog about 1 year ago

#46 - Wittyer4mat fp count

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#46 - Wittyer4mat fp count

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#45 - Make Smartseq Report Upload Process Optional

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#45 - Make Smartseq Report Upload Process Optional

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#44 - correct memory format

Pull Request - State: closed - Opened by stellaning1120 over 1 year ago - 2 comments

#44 - correct memory format

Pull Request - State: closed - Opened by stellaning1120 over 1 year ago - 2 comments

#43 - Wittyer WDL Output Updates

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#43 - Wittyer WDL Output Updates

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#41 - Update CollectSamErrorMetrics.wdl

Pull Request - State: closed - Opened by lfleming1022 over 1 year ago

#41 - Update CollectSamErrorMetrics.wdl

Pull Request - State: closed - Opened by lfleming1022 over 1 year ago

#40 - M2 cnv updates 1534

Pull Request - State: open - Opened by yueyaog over 1 year ago

#40 - M2 cnv updates 1534

Pull Request - State: open - Opened by yueyaog over 1 year ago

#39 - Add original HaplotypeCaller wdl from GOTK repo as M2 Subworkflow

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#39 - Add original HaplotypeCaller wdl from GOTK repo as M2 Subworkflow

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#38 - Update CNV and M2 to GATK official workflows

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#38 - Update CNV and M2 to GATK official workflows

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#37 - Clean Up Terra Failed Submissions

Pull Request - State: closed - Opened by yueyaog over 1 year ago - 1 comment

#37 - Clean Up Terra Failed Submissions

Pull Request - State: closed - Opened by yueyaog over 1 year ago - 1 comment

#36 - Error importing iChorCNA WDL script into DNAnexus

Issue - State: closed - Opened by ninaxiong11 over 1 year ago - 1 comment

#36 - Error importing iChorCNA WDL script into DNAnexus

Issue - State: closed - Opened by ninaxiong11 over 1 year ago - 1 comment

#35 - SmartSeq wdl modification

Pull Request - State: closed - Opened by stellaning1120 over 1 year ago - 2 comments

#35 - SmartSeq wdl modification

Pull Request - State: closed - Opened by stellaning1120 over 1 year ago - 2 comments

#34 - Annotate bed

Pull Request - State: closed - Opened by stellaning1120 over 1 year ago

#34 - Annotate bed

Pull Request - State: closed - Opened by stellaning1120 over 1 year ago

#33 - prevent empty array input

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#33 - prevent empty array input

Pull Request - State: closed - Opened by yueyaog over 1 year ago

#32 - Downsamplebam

Pull Request - State: closed - Opened by stellaning1120 over 1 year ago - 1 comment

#32 - Downsamplebam

Pull Request - State: closed - Opened by stellaning1120 over 1 year ago - 1 comment

#31 - Add Interval Check Procedure in Duplex Workflow

Pull Request - State: closed - Opened by yueyaog almost 2 years ago - 1 comment

#31 - Add Interval Check Procedure in Duplex Workflow

Pull Request - State: closed - Opened by yueyaog almost 2 years ago - 1 comment

#30 - Adding dev version of checkBaitSetName WDL

Pull Request - State: closed - Opened by MicahR-Y almost 2 years ago

#30 - Adding dev version of checkBaitSetName WDL

Pull Request - State: closed - Opened by MicahR-Y almost 2 years ago

#29 - Griffin Pipeline

Pull Request - State: closed - Opened by yueyaog almost 2 years ago - 1 comment

#29 - Griffin Pipeline

Pull Request - State: closed - Opened by yueyaog almost 2 years ago - 1 comment

#28 - adding option to fail task

Pull Request - State: closed - Opened by yueyaog almost 2 years ago - 1 comment

#28 - adding option to fail task

Pull Request - State: closed - Opened by yueyaog almost 2 years ago - 1 comment

#27 - Bait set name

Pull Request - State: closed - Opened by yueyaog almost 2 years ago

#27 - Bait set name

Pull Request - State: closed - Opened by yueyaog almost 2 years ago

#26 - Updating M2 to take mem input

Pull Request - State: closed - Opened by MicahR-Y almost 2 years ago - 3 comments

#26 - Updating M2 to take mem input

Pull Request - State: closed - Opened by MicahR-Y almost 2 years ago - 3 comments