broadinstitute/ml4h issues and pull requests

#474 - Bump tensorflow from 2.5.0 to 2.5.2 in /docker/vm_boot_images/config

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#473 - terra docker image version update

Pull Request - State: closed - Opened by amygdala almost 3 years ago - 1 comment

#472 - ML4H Notebooks for terra

Pull Request - State: closed - Opened by lucidtronix almost 3 years ago - 3 comments

#471 - Turn on Jupyter table of contents for mnist notebook.

Pull Request - State: closed - Opened by deflaux about 3 years ago

#470 - bump the docker image versions for the Terra notebooks

Pull Request - State: closed - Opened by amygdala about 3 years ago - 2 comments

#469 - updates to Terra dockerfile & TF requirements file to support new Terra base image & lib changes

Pull Request - State: closed - Opened by amygdala about 3 years ago - 3 comments

#468 - Update workflow directory paths.

Pull Request - State: closed - Opened by deflaux about 3 years ago - 1 comment

#467 - ml4h terra workspace description update

Pull Request - State: closed - Opened by amygdala about 3 years ago - 1 comment

#466 - add the mnist notebook to the Terra publishing workflow

Pull Request - State: closed - Opened by amygdala about 3 years ago

#465 - update notebooks for new Terra image

Pull Request - State: closed - Opened by amygdala about 3 years ago - 1 comment

#464 - Bump pillow from 8.2.0 to 8.3.2 in /docker/vm_boot_images/config

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#463 - Update Dockerfile to use TF 2.4

Pull Request - State: closed - Opened by amygdala about 3 years ago

#462 - migrate mi modelling to the zoo

Pull Request - State: closed - Opened by mklarqvist about 3 years ago - 1 comment

#461 - Bump tensorflow from 2.3.0 to 2.5.1 in /model_zoo/PCLR

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#460 - Bump tensorflow from 2.5.0 to 2.5.1 in /docker/vm_boot_images/config

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#459 - GATK TensorMaps

Pull Request - State: closed - Opened by lucidtronix about 3 years ago

#458 - MNIST survival notebook cleanup

Pull Request - State: closed - Opened by lucidtronix about 3 years ago - 1 comment

#457 - issues running the `mnist_survival_analysis_demo.ipynb` notebook

Issue - State: closed - Opened by amygdala about 3 years ago - 3 comments

#456 - fix display of MRI images in plot_mri_tensor_as_animation

Issue - State: open - Opened by deflaux about 3 years ago - 2 comments
Labels: bug

#455 - Lead II PCLR

Pull Request - State: closed - Opened by ndiamant about 3 years ago

#453 - Update terra image to reflect base image update

Pull Request - State: closed - Opened by amygdala about 3 years ago - 3 comments

#448 - Bump tensorflow from 2.3.0 to 2.4.2 in /model_zoo/PCLR

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#444 - Bump urllib3 from 1.26.4 to 1.26.5 in /model_zoo/PCLR

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#441 - Update README.md with bibtex citation

Pull Request - State: closed - Opened by ndiamant over 3 years ago

#440 - Transformer Model Blocks and HD5 arrays as text TensorMaps

Pull Request - State: closed - Opened by lucidtronix over 3 years ago - 1 comment

#430 - generalized routines for extracting data from xmls

Pull Request - State: closed - Opened by mklarqvist over 3 years ago

#429 - regplot update to return OLS summary statistics

Pull Request - State: closed - Opened by mklarqvist over 3 years ago - 1 comment

#427 - autosegmentation of dixon 3d volumes

Pull Request - State: closed - Opened by mklarqvist over 3 years ago

#426 - ml4ht integration

Pull Request - State: closed - Opened by ndiamant over 3 years ago - 2 comments

#422 - new mri tensor maps

Pull Request - State: closed - Opened by lucidtronix over 3 years ago

#420 - Survival inference & plot cleanup

Pull Request - State: closed - Opened by lucidtronix over 3 years ago

#419 - Detach disk script

Pull Request - State: closed - Opened by lucidtronix over 3 years ago

#414 - segmentation evaluations

Pull Request - State: closed - Opened by mklarqvist almost 4 years ago - 3 comments

#400 - Making paths for mnist hd5 folder less confusing

Pull Request - State: closed - Opened by gsarma almost 4 years ago

#397 - Little more cleanup

Pull Request - State: closed - Opened by lucidtronix almost 4 years ago

#388 - Create RECIPE_EXAMPLES.md

Pull Request - State: closed - Opened by ndiamant about 4 years ago

#380 - Migrate to tf.data.Dataset and/or torch.utils.data.DataLoader

Issue - State: closed - Opened by mklarqvist about 4 years ago - 1 comment

#373 - Tensorflow 2.2.0 errors

Issue - State: closed - Opened by mklarqvist about 4 years ago - 1 comment
Labels: enhancement

#371 - Protected Maps

Pull Request - State: closed - Opened by lucidtronix about 4 years ago

#370 - Tensorizes tabular data from UKBB CSVs

Pull Request - State: closed - Opened by paolodi about 4 years ago - 1 comment

#362 - included a function to plot pearson correlations stratified by protected tmaps in bias_evaluator.ipynb

Pull Request - State: closed - Opened by gnovikov about 4 years ago

#361 - quick debasing -> ignoring partners tmaps initially

Pull Request - State: closed - Opened by mklarqvist about 4 years ago - 6 comments

#359 - Model Factory Everything is a block

Issue - State: closed - Opened by lucidtronix about 4 years ago - 3 comments

#356 - Nd explore multi 2

Pull Request - State: closed - Opened by ndiamant about 4 years ago - 1 comment

#353 - TensorGenerator type system profile

Issue - State: closed - Opened by ndiamant over 4 years ago - 3 comments
Labels: enhancement

#349 - tensor paths are revisited before other tensor paths are seen at least once

Issue - State: closed - Opened by StevenSong over 4 years ago

#348 - Multi(process and model) inference

Pull Request - State: closed - Opened by ndiamant over 4 years ago - 1 comment

#346 - not all tensors properly used by train

Issue - State: closed - Opened by erikr over 4 years ago - 1 comment
Labels: bug

#341 - Start at visualizing generative models automatically

Pull Request - State: closed - Opened by ndiamant over 4 years ago
Labels: enhancement

#323 - refactor concurrency to not use qsize

Issue - State: closed - Opened by StevenSong over 4 years ago - 4 comments
Labels: enhancement

#224 - initial refactoring of tensor_from_file

Pull Request - State: closed - Opened by mklarqvist over 4 years ago - 13 comments

#221 - Fix EagerVariableNameReuse error

Issue - State: closed - Opened by ndiamant over 4 years ago - 2 comments

#213 - Validation Plots A B C D framework

Issue - State: closed - Opened by lucidtronix over 4 years ago - 1 comment
Labels: enhancement

#190 - Make Encoders and Decoders block agnostic

Issue - State: closed - Opened by ndiamant over 4 years ago
Labels: enhancement

#127 - Intel MKL Dockerfile for local CPUs

Pull Request - State: closed - Opened by mklarqvist over 4 years ago - 3 comments
Labels: enhancement

#121 - First generalization of data ingestion and explore capabilities

Pull Request - State: closed - Opened by mklarqvist over 4 years ago - 2 comments
Labels: enhancement

#111 - consolidating lubitz data mart scripts and instructions

Pull Request - State: closed - Opened by gpbatra over 4 years ago - 1 comment

GitHub / broadinstitute/ml4h issues and pull requests