Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / broadinstitute/jump_hub issues and pull requests

#67 - Consider ideas from the docs of other resources for improving JUMP Hub docs

Issue - State: open - Opened by shntnu about 2 months ago - 2 comments

#67 - Consider ideas from the docs of other resources for improving JUMP Hub docs

Issue - State: open - Opened by shntnu about 2 months ago - 2 comments

#66 - Recreate sample_notebook as a how-to

Issue - State: open - Opened by shntnu about 2 months ago

#66 - Recreate sample_notebook as a how-to

Issue - State: open - Opened by shntnu about 2 months ago

#65 - Update links + fix formatting

Pull Request - State: open - Opened by shntnu about 2 months ago

#65 - Update links + fix formatting

Pull Request - State: open - Opened by shntnu about 2 months ago

#64 - Consider moving JUMPer documentation to JUMP Hub

Issue - State: open - Opened by shntnu about 2 months ago - 2 comments

#64 - Consider moving JUMPer documentation to JUMP Hub

Issue - State: open - Opened by shntnu about 2 months ago - 2 comments

#63 - Add info about JCP IDs and other key identifiers used

Issue - State: open - Opened by shntnu about 2 months ago

#63 - Add info about JCP IDs and other key identifiers used

Issue - State: open - Opened by shntnu about 2 months ago

#62 - Adding link to zenodo resources, updating definitions

Pull Request - State: closed - Opened by AnneCarpenter about 2 months ago - 1 comment

#62 - Adding link to zenodo resources, updating definitions

Pull Request - State: closed - Opened by AnneCarpenter about 2 months ago - 1 comment

#61 - Data sources link broken

Issue - State: closed - Opened by AnneCarpenter about 2 months ago - 1 comment

#61 - Data sources link broken

Issue - State: closed - Opened by AnneCarpenter about 2 months ago - 1 comment

#60 - Annotation-related how-tos

Issue - State: open - Opened by afermg about 2 months ago
Labels: enhancement

#60 - Annotation-related how-tos

Issue - State: open - Opened by afermg about 2 months ago
Labels: enhancement

#59 - wrong source

Pull Request - State: closed - Opened by ErinWeisbart 2 months ago

#59 - wrong source

Pull Request - State: closed - Opened by ErinWeisbart 2 months ago

#58 - Update cite.md

Pull Request - State: closed - Opened by ErinWeisbart 2 months ago

#58 - Update cite.md

Pull Request - State: closed - Opened by ErinWeisbart 2 months ago

#57 - CI/CD runs examples twice

Issue - State: open - Opened by afermg 2 months ago

#57 - CI/CD runs examples twice

Issue - State: open - Opened by afermg 2 months ago

#56 - Fix(display_images): fix displaying colors

Pull Request - State: closed - Opened by HugoHakem 3 months ago
Labels: bug

#56 - Fix(display_images): fix displaying colors

Pull Request - State: closed - Opened by HugoHakem 3 months ago
Labels: bug

#55 - fix #51

Pull Request - State: closed - Opened by afermg 3 months ago

#55 - fix #51

Pull Request - State: closed - Opened by afermg 3 months ago

#54 - fix #42

Pull Request - State: closed - Opened by afermg 3 months ago

#54 - fix #42

Pull Request - State: closed - Opened by afermg 3 months ago

#53 - Link Morpheus to interactive_tools.md

Pull Request - State: closed - Opened by shntnu 3 months ago

#53 - Link Morpheus to interactive_tools.md

Pull Request - State: closed - Opened by shntnu 3 months ago

#52 - Credit author

Pull Request - State: closed - Opened by shntnu 3 months ago

#52 - Credit author

Pull Request - State: closed - Opened by shntnu 3 months ago

#51 - notebooks

Issue - State: closed - Opened by AnneCarpenter 3 months ago

#51 - notebooks

Issue - State: closed - Opened by AnneCarpenter 3 months ago

#50 - Update 0_howto.md

Pull Request - State: closed - Opened by AnneCarpenter 3 months ago

#50 - Update 0_howto.md

Pull Request - State: closed - Opened by AnneCarpenter 3 months ago

#49 - buncha edits

Pull Request - State: closed - Opened by AnneCarpenter 3 months ago

#49 - buncha edits

Pull Request - State: closed - Opened by AnneCarpenter 3 months ago

#48 - broken link

Issue - State: closed - Opened by AnneCarpenter 3 months ago - 1 comment

#48 - broken link

Issue - State: closed - Opened by AnneCarpenter 3 months ago - 1 comment

#47 - Update index.md

Pull Request - State: closed - Opened by AnneCarpenter 3 months ago - 1 comment

#47 - Update index.md

Pull Request - State: closed - Opened by AnneCarpenter 3 months ago - 1 comment

#46 - add references

Pull Request - State: closed - Opened by AnneCarpenter 3 months ago

#46 - add references

Pull Request - State: closed - Opened by AnneCarpenter 3 months ago

#45 - add link to interactive tools instructions

Pull Request - State: closed - Opened by AnneCarpenter 3 months ago - 1 comment

#45 - add link to interactive tools instructions

Pull Request - State: closed - Opened by AnneCarpenter 3 months ago - 1 comment

#44 - Add links to further resources

Issue - State: closed - Opened by afermg 3 months ago - 1 comment

#44 - Add links to further resources

Issue - State: closed - Opened by afermg 3 months ago - 1 comment

#43 - Update readme.md

Pull Request - State: closed - Opened by shntnu 4 months ago

#43 - Update readme.md

Pull Request - State: closed - Opened by shntnu 4 months ago

#42 - add colab files

Pull Request - State: closed - Opened by shntnu 4 months ago - 1 comment

#42 - add colab files

Pull Request - State: closed - Opened by shntnu 4 months ago - 1 comment

#41 - chore(deps-dev): bump zipp from 3.17.0 to 3.19.1 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#41 - chore(deps-dev): bump zipp from 3.17.0 to 3.19.1 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#40 - chore(deps): bump certifi from 2023.11.17 to 2024.7.4 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#40 - chore(deps): bump certifi from 2023.11.17 to 2024.7.4 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#39 - remove orf image notebook

Pull Request - State: closed - Opened by jessica-ewald 6 months ago - 1 comment

#39 - remove orf image notebook

Pull Request - State: closed - Opened by jessica-ewald 6 months ago - 1 comment

#38 - add notebook for displaying orf images

Pull Request - State: closed - Opened by jessica-ewald 6 months ago - 1 comment

#38 - add notebook for displaying orf images

Pull Request - State: closed - Opened by jessica-ewald 6 months ago - 1 comment

#37 - Explore vignettes

Issue - State: closed - Opened by niranjchandrasekaran 7 months ago - 3 comments
Labels: internal

#37 - Explore vignettes

Issue - State: closed - Opened by niranjchandrasekaran 7 months ago - 3 comments
Labels: internal

#36 - build(deps): bump scikit-learn from 1.4.0 to 1.5.0 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#36 - build(deps): bump scikit-learn from 1.4.0 to 1.5.0 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#35 - build(deps): bump urllib3 from 2.1.0 to 2.2.2 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#35 - build(deps): bump urllib3 from 2.1.0 to 2.2.2 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#34 - build(deps): bump tornado from 6.4 to 6.4.1 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#34 - build(deps): bump tornado from 6.4 to 6.4.1 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#33 - build(deps): bump requests from 2.31.0 to 2.32.0 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#33 - build(deps): bump requests from 2.31.0 to 2.32.0 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#32 - build(deps): bump jinja2 from 3.1.3 to 3.1.4 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#32 - build(deps): bump jinja2 from 3.1.3 to 3.1.4 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#31 - build(deps-dev): bump jinja2 from 3.1.3 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#31 - build(deps-dev): bump jinja2 from 3.1.3 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#30 - build(deps): bump tqdm from 4.66.1 to 4.66.3 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#30 - build(deps): bump tqdm from 4.66.1 to 4.66.3 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#29 - Update tutorial_basic.py

Pull Request - State: closed - Opened by shntnu 10 months ago

#29 - Update tutorial_basic.py

Pull Request - State: closed - Opened by shntnu 10 months ago

#28 - build(deps): bump aiohttp from 3.9.3 to 3.9.4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#28 - build(deps): bump aiohttp from 3.9.3 to 3.9.4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#27 - build(deps): bump idna from 3.6 to 3.7 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#27 - build(deps): bump idna from 3.6 to 3.7 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#26 - build(deps): bump idna from 3.6 to 3.7

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#26 - build(deps): bump idna from 3.6 to 3.7

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#25 - build(deps): bump pillow from 10.2.0 to 10.3.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#25 - build(deps): bump pillow from 10.2.0 to 10.3.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#24 - build(deps): bump pillow from 10.2.0 to 10.3.0 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#24 - build(deps): bump pillow from 10.2.0 to 10.3.0 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#23 - build(deps): bump pyyaml from 5.3.1 to 5.4 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#23 - build(deps): bump pyyaml from 5.3.1 to 5.4 in /bak

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#22 - FOXO3/TGFB short mention (CRISPR)

Issue - State: closed - Opened by afermg about 1 year ago - 13 comments
Labels: crispr, confirms previously known story, internal

#22 - FOXO3/TGFB short mention (CRISPR)

Issue - State: closed - Opened by afermg about 1 year ago - 13 comments
Labels: crispr, confirms previously known story, internal

#21 - build(deps): bump pillow from 10.1.0 to 10.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#21 - build(deps): bump pillow from 10.1.0 to 10.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#20 - Definition of ORF and CRISPR similarity clusters

Issue - State: closed - Opened by auranic about 1 year ago - 1 comment
Labels: orf, crispr

#19 - build(deps): bump jupyterlab from 4.0.9 to 4.0.11

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#19 - build(deps): bump jupyterlab from 4.0.9 to 4.0.11

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#18 - build(deps): bump notebook from 7.0.6 to 7.0.7

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#18 - build(deps): bump notebook from 7.0.6 to 7.0.7

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#17 - POLRID, SPATA25 connected to many genes: exploration for MorphMap paper (ORF, but want to check CRISPR)

Issue - State: closed - Opened by AnneCarpenter about 1 year ago - 7 comments
Labels: orf, crispr, On hold