broadinstitute/gnomad-toolbox issues and pull requests

#22 - Assign gnomad version to at least v0.8.2

Pull Request - State: closed - Opened by KoalaQin 20 days ago

#21 - Reformat license to be the allowed classifier

Pull Request - State: closed - Opened by KoalaQin 21 days ago

#20 - Remove to-dos, handle lint warnings and run notebooks

Pull Request - State: closed - Opened by KoalaQin 21 days ago - 1 comment
Labels: toolbox

#19 - Merge development branch into main

Pull Request - State: closed - Opened by jkgoodrich 21 days ago - 1 comment
Labels: toolbox

#18 - Readme changes and addition of jupyter configs

Pull Request - State: closed - Opened by jkgoodrich 22 days ago - 3 comments
Labels: toolbox

#17 - Update notebooks to use new functions

Pull Request - State: closed - Opened by KoalaQin 29 days ago - 1 comment

#16 - Suggested changes to computing plofs

Pull Request - State: closed - Opened by jkgoodrich 30 days ago - 5 comments
Labels: toolbox

#15 - Bump virtualenv from 20.26.3 to 20.26.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: dependencies

#14 - Change to use some interval functions added to gnomad_methods

Pull Request - State: closed - Opened by jkgoodrich about 1 month ago - 1 comment
Labels: toolbox

#13 - Bump jinja2 from 3.1.4 to 3.1.5 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: dependencies

#12 - Filter variants by gene symbol

Pull Request - State: closed - Opened by KoalaQin about 1 month ago - 4 comments
Labels: toolbox

#11 - Get pLOFs for each gene

Pull Request - State: closed - Opened by KoalaQin about 1 month ago - 1 comment
Labels: toolbox

#10 - Change `filter_by_csqs` to `filter_by_consequence_category` and clean it up and use gnomad_methods function

Pull Request - State: closed - Opened by jkgoodrich about 2 months ago - 1 comment
Labels: toolbox

#9 - Filter variants by gene symbol using the filter CDS function

Pull Request - State: closed - Opened by KoalaQin about 2 months ago - 1 comment
Labels: toolbox

#8 - Use gnomad_methods variant parser

Pull Request - State: closed - Opened by jkgoodrich about 2 months ago - 3 comments
Labels: toolbox

#7 - Add instructions to set up an env to use notebooks

Pull Request - State: closed - Opened by KoalaQin about 2 months ago - 1 comment
Labels: toolbox

#6 - Use updated freq_bin_expr in gnomad_methods

Pull Request - State: closed - Opened by jkgoodrich about 2 months ago
Labels: toolbox

#5 - Suggestions on the initial toolbox PR

Pull Request - State: closed - Opened by jkgoodrich 2 months ago - 1 comment
Labels: toolbox

#4 - First draft of Toolbox use cases

Pull Request - State: closed - Opened by KoalaQin 4 months ago - 3 comments
Labels: toolbox

#3 - Bump urllib3 from 1.26.18 to 1.26.19 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 2 comments
Labels: dependencies

#2 - Bump certifi from 2023.7.22 to 2024.7.4 in /docs