broadinstitute/gnomad-browser issues and pull requests

#1673 - Link to changelog entry isn't working

Issue - State: closed - Opened by KoalaQin 8 days ago

#1672 - Repartition gene model release tables

Pull Request - State: closed - Opened by rileyhgrant 9 days ago

#1671 - Handle empty submissions in ClinVar pipeline

Pull Request - State: closed - Opened by rileyhgrant 10 days ago

#1670 - Update gencode version text on gene page

Pull Request - State: closed - Opened by rileyhgrant 15 days ago

#1669 - Update Data page with mito constraint files

Issue - State: open - Opened by ch-kr 16 days ago

#1668 - Update website content

Pull Request - State: closed - Opened by rileyhgrant 17 days ago - 2 comments

#1667 - Filter gene variant queries to exons consistently

Pull Request - State: open - Opened by rileyhgrant 17 days ago

#1666 - Remove "show transcripts" for mtDNA genes

Issue - State: open - Opened by ch-kr 21 days ago

#1665 - Update strs bw2 20241010

Pull Request - State: open - Opened by bw2 about 1 month ago

#1663 - Use ES aliases again in production

Pull Request - State: closed - Opened by rileyhgrant about 2 months ago

#1649 - Update STR page allele size histogram to show colors based on genotype quality or other values

Pull Request - State: open - Opened by bw2 3 months ago

#1645 - Automate blue/green updates for the browser/API

Pull Request - State: open - Opened by sjahl 3 months ago - 1 comment

#1643 - Repartition browser gene model release Hail Tables

Issue - State: closed - Opened by gtiao 3 months ago - 2 comments

#1617 - incorrect translation of ALDOA

Issue - State: open - Opened by liskinsk 5 months ago

#1599 - feat(docs): add information on how to speed up large pipelines

Pull Request - State: closed - Opened by rileyhgrant 6 months ago

#1451 - Constraint for mitochondrial genes

Pull Request - State: open - Opened by phildarnowsky-broad 10 months ago - 6 comments

#1409 - Add mitochondrial gene and regional constraint to browser

Issue - State: open - Opened by ch-kr 12 months ago - 5 comments

#424 - Add male/female breakdown on variant page

Issue - State: closed - Opened by mattsolo1 over 6 years ago - 1 comment

#99 - Pin version of MongoDB

Pull Request - State: closed - Opened by nawatts over 6 years ago

#98 - Add prop to to control how transcript ID is rendered in TranscriptTrack

Pull Request - State: closed - Opened by nawatts over 6 years ago

#97 - Add selected transcripts to browser history

Issue - State: closed - Opened by nawatts over 6 years ago - 1 comment

#96 - Sorting table by consequence should sort by consequence severity

Issue - State: closed - Opened by nawatts over 6 years ago - 1 comment

#95 - Remove duplicate ESLint dependencies

Pull Request - State: closed - Opened by nawatts over 6 years ago

#95 - Remove duplicate ESLint dependencies

Pull Request - State: closed - Opened by nawatts over 6 years ago

#94 - Add option for setting fill color of ManhattanPlot points

Pull Request - State: closed - Opened by nawatts over 6 years ago

#94 - Add option for setting fill color of ManhattanPlot points

Pull Request - State: closed - Opened by nawatts over 6 years ago

#93 - Collapse transcript list by default

Pull Request - State: closed - Opened by nawatts over 6 years ago

#92 - Fix coverage track example

Pull Request - State: closed - Opened by nawatts over 6 years ago

#92 - Fix coverage track example

Pull Request - State: closed - Opened by nawatts over 6 years ago

#91 - Organize transcript track package

Pull Request - State: closed - Opened by nawatts over 6 years ago

#91 - Organize transcript track package

Pull Request - State: closed - Opened by nawatts over 6 years ago

#90 - Add track for ClinVar variants

Pull Request - State: closed - Opened by nawatts over 6 years ago - 3 comments

#90 - Add track for ClinVar variants

Pull Request - State: closed - Opened by nawatts over 6 years ago - 3 comments

#89 - Remove unused or unnecessary test files

Pull Request - State: closed - Opened by nawatts over 6 years ago

#88 - Remove unused navigator reducer

Pull Request - State: closed - Opened by nawatts over 6 years ago

#87 - Fix table row rendering for rows that have not yet loaded

Pull Request - State: closed - Opened by nawatts over 6 years ago

#87 - Fix table row rendering for rows that have not yet loaded

Pull Request - State: closed - Opened by nawatts over 6 years ago

#86 - Remove withRouter from VariantTable

Pull Request - State: closed - Opened by nawatts over 6 years ago

#86 - Remove withRouter from VariantTable

Pull Request - State: closed - Opened by nawatts over 6 years ago

#85 - Rename 'snp' field in Manhattan plot data to generic 'id'

Pull Request - State: closed - Opened by nawatts over 6 years ago

#85 - Rename 'snp' field in Manhattan plot data to generic 'id'

Pull Request - State: closed - Opened by nawatts over 6 years ago

#84 - Add alternating chromosome color option + locus highlighting to manhattan plot

Issue - State: closed - Opened by mattsolo1 over 6 years ago - 2 comments

#84 - Add alternating chromosome color option + locus highlighting to manhattan plot

Issue - State: closed - Opened by mattsolo1 over 6 years ago - 2 comments

#83 - Use position for x axis in Manhattan plot

Pull Request - State: closed - Opened by nawatts over 6 years ago

#82 - Prevent transcript fan out from moving region viewer

Pull Request - State: closed - Opened by nawatts over 6 years ago

#81 - Correct "start lost" consequence label

Pull Request - State: closed - Opened by nawatts over 6 years ago

#81 - Correct "start lost" consequence label

Pull Request - State: closed - Opened by nawatts over 6 years ago

#80 - Return all ClinVar variants instead of only first page

Pull Request - State: closed - Opened by nawatts over 6 years ago

#79 - Add case/control allele frequency columns to SCHEMA analysis groups table

Pull Request - State: closed - Opened by nawatts over 6 years ago

#78 - Update SCHEMA homepage

Pull Request - State: closed - Opened by mattsolo1 over 6 years ago

#78 - Update SCHEMA homepage

Pull Request - State: closed - Opened by mattsolo1 over 6 years ago

#77 - Change layout of variant details section in SCHEMA browser

Pull Request - State: closed - Opened by nawatts over 6 years ago

#77 - Change layout of variant details section in SCHEMA browser

Pull Request - State: closed - Opened by nawatts over 6 years ago

#76 - Refactor Manhattan plot

Pull Request - State: closed - Opened by nawatts over 6 years ago

#76 - Refactor Manhattan plot

Pull Request - State: closed - Opened by nawatts over 6 years ago

#75 - Tweak SCHEMA home page styles

Pull Request - State: closed - Opened by nawatts over 6 years ago

#75 - Tweak SCHEMA home page styles

Pull Request - State: closed - Opened by nawatts over 6 years ago

#74 - Make gene results table sorting consistent with variant table

Pull Request - State: closed - Opened by nawatts over 6 years ago

#74 - Make gene results table sorting consistent with variant table

Pull Request - State: closed - Opened by nawatts over 6 years ago

#73 - Correct dependencies of redux-variants package

Pull Request - State: closed - Opened by nawatts over 6 years ago - 1 comment

#73 - Correct dependencies of redux-variants package

Pull Request - State: closed - Opened by nawatts over 6 years ago - 1 comment

#72 - Remove unused history argument from setFocusedVariant action

Pull Request - State: closed - Opened by nawatts over 6 years ago

#72 - Remove unused history argument from setFocusedVariant action

Pull Request - State: closed - Opened by nawatts over 6 years ago

#71 - When sorting variants by a field, sort variants with a null value for that field to the end of the list

Pull Request - State: closed - Opened by nawatts over 6 years ago - 1 comment

#71 - When sorting variants by a field, sort variants with a null value for that field to the end of the list

Pull Request - State: closed - Opened by nawatts over 6 years ago - 1 comment

#70 - Tweaks to SCHEMA browser's variant table

Pull Request - State: closed - Opened by nawatts over 6 years ago - 1 comment

#70 - Tweaks to SCHEMA browser's variant table

Pull Request - State: closed - Opened by nawatts over 6 years ago - 1 comment

#69 - Updates for SCHEMA browser

Pull Request - State: closed - Opened by nawatts over 6 years ago

#69 - Updates for SCHEMA browser

Pull Request - State: closed - Opened by nawatts over 6 years ago

#68 - Script for loading latest SCHEMA dataset

Pull Request - State: closed - Opened by nawatts over 6 years ago

#67 - Support linking to help topics

Issue - State: closed - Opened by nawatts over 6 years ago

#66 - Fix keyboard shortcuts for search

Pull Request - State: closed - Opened by nawatts over 6 years ago

#66 - Fix keyboard shortcuts for search

Pull Request - State: closed - Opened by nawatts over 6 years ago

#65 - Keyboard shortcut for variant search does not work

Issue - State: closed - Opened by nawatts over 6 years ago

#65 - Keyboard shortcut for variant search does not work

Issue - State: closed - Opened by nawatts over 6 years ago

#64 - Remove unused packages

Pull Request - State: closed - Opened by nawatts over 6 years ago

#63 - Remove dependencies on plot-traffic package

Pull Request - State: closed - Opened by nawatts over 6 years ago

#62 - Sort tissues in isoform expression menu alphabetically

Pull Request - State: closed - Opened by nawatts over 6 years ago

#62 - Sort tissues in isoform expression menu alphabetically

Pull Request - State: closed - Opened by nawatts over 6 years ago

#61 - Add issue templates

Pull Request - State: closed - Opened by nawatts over 6 years ago

#61 - Add issue templates

Pull Request - State: closed - Opened by nawatts over 6 years ago

#60 - Suggestion (see picture): show variant population frequencies on gene page

Issue - State: closed - Opened by nawatts over 6 years ago - 1 comment
Labels: Type: Feature Request, Resolution: Won't Do

#60 - Suggestion (see picture): show variant population frequencies on gene page

Issue - State: closed - Opened by nawatts over 6 years ago - 1 comment
Labels: Type: Feature Request, Resolution: Won't Do

#59 - Speed improvements

Issue - State: closed - Opened by nawatts over 6 years ago - 2 comments
Labels: Type: Umbrella

#58 - If variant not in database, automatically redirect to region search showing 20 BP either side

Issue - State: closed - Opened by nawatts over 6 years ago - 1 comment

#58 - If variant not in database, automatically redirect to region search showing 20 BP either side

Issue - State: closed - Opened by nawatts over 6 years ago - 1 comment

#57 - ExAC/gnomAD flipping

Issue - State: closed - Opened by nawatts over 6 years ago - 3 comments

#56 - Allow selecting coverage metrics other than mean

Issue - State: closed - Opened by nawatts over 6 years ago

#56 - Allow selecting coverage metrics other than mean

Issue - State: closed - Opened by nawatts over 6 years ago

#55 - Annotation mis-assignment

Issue - State: closed - Opened by nawatts over 6 years ago

#55 - Annotation mis-assignment

Issue - State: closed - Opened by nawatts over 6 years ago

#54 - region search doesn't work on chrX (but does work on others)

Issue - State: closed - Opened by nawatts over 6 years ago - 1 comment

#53 - Some genes not returning variants

Issue - State: closed - Opened by nawatts over 6 years ago - 4 comments
Labels: Type: Bug, Component: API

#53 - Some genes not returning variants

Issue - State: closed - Opened by nawatts over 6 years ago - 4 comments
Labels: Type: Bug, Component: API

GitHub / broadinstitute/gnomad-browser issues and pull requests