broadinstitute/gatk-bwamem-jni issues and pull requests

#22 - Depending on the tip of bwa master branch

Issue - State: open - Opened by pgrt almost 3 years ago

#21 - only c code creates buffers

Pull Request - State: closed - Opened by tedsharpe over 5 years ago - 2 comments

#20 - -5 option bitwise flag

Issue - State: open - Opened by wbrandler about 6 years ago

#19 - Now one can specify the expected insert size distribution as supposed…

Pull Request - State: closed - Opened by vruano almost 7 years ago - 3 comments

#18 - enable travis and add badges to readme

Pull Request - State: closed - Opened by lbergelson about 7 years ago - 3 comments

#17 - Adds pointer to the Picard project instructions to set-up sonatype an…

Pull Request - State: closed - Opened by vruano over 7 years ago

#16 - Update README with additional info as to how to make a release.

Issue - State: closed - Opened by vruano over 7 years ago

#15 - Create a new release to propagate the index.close() fix.

Issue - State: closed - Opened by vruano over 7 years ago - 3 comments

#14 - Fixes a bug where index weren't actually cleared from memory once clo…

Pull Request - State: closed - Opened by vruano over 7 years ago

#13 - Add static method to return default image file name

Pull Request - State: closed - Opened by magicDGS over 7 years ago - 4 comments

#12 - update readme and artifactory url

Pull Request - State: closed - Opened by lbergelson over 7 years ago - 2 comments

#11 - Update to the new Apache2 branch head commit (cb950614ce72).

Pull Request - State: closed - Opened by vruano over 7 years ago - 2 comments

#10 - Update the Bwa (Apache2) dependency to point to the new merge.

Issue - State: closed - Opened by vruano over 7 years ago - 1 comment
Labels: enhancement

#9 - On the need for the BwaMemAlignment class considering the existence of SAMRecord.

Issue - State: closed - Opened by vruano over 7 years ago - 5 comments
Labels: question

#8 - Ask for an update of the Apache2 branch in bwa(lib)

Issue - State: closed - Opened by vruano over 7 years ago - 3 comments
Labels: enhancement

#7 - Adds a method to create the index files given a fasta file.

Pull Request - State: closed - Opened by vruano over 7 years ago - 9 comments

#6 - do some error checking

Pull Request - State: closed - Opened by tedsharpe over 7 years ago - 6 comments

#5 - Add method to return reference contig lengths

Issue - State: open - Opened by tedsharpe almost 8 years ago

#4 - expose the ability to index a fasta through the JNI

Issue - State: closed - Opened by lbergelson almost 8 years ago - 13 comments

#3 - check state of aligner

Pull Request - State: closed - Opened by tedsharpe almost 8 years ago - 1 comment

#2 - adding gradle script to build and upload

Pull Request - State: closed - Opened by lbergelson almost 8 years ago

#1 - first commit

Pull Request - State: closed - Opened by tedsharpe about 8 years ago - 5 comments

Ecosyste.ms: Issues

GitHub / broadinstitute/gatk-bwamem-jni issues and pull requests