Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / broadinstitute/carrot issues and pull requests

#100 - Add support for private GitHub repo integration

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: Feature

#100 - Add support for private GitHub repo integration

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: Feature

#98 - Carrot adds input for docker image from GitHub when key is empty

Issue - State: closed - Opened by KevinCLydon over 4 years ago
Labels: bug

#98 - Carrot adds input for docker image from GitHub when key is empty

Issue - State: closed - Opened by KevinCLydon over 4 years ago
Labels: bug

#97 - Adding in a logo file so we can reference it in the README.

Pull Request - State: closed - Opened by jonn-smith over 4 years ago

#97 - Adding in a logo file so we can reference it in the README.

Pull Request - State: closed - Opened by jonn-smith over 4 years ago

#96 - Triggering runs from GitHub

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago

#95 - Remove naming requirement from mapping test outputs to eval inputs

Issue - State: closed - Opened by KevinCLydon over 4 years ago
Labels: Feature

#94 - Modify resource retrieval to use service account auth for gs uris

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: Feature

#93 - Add explicit types to variables

Issue - State: open - Opened by KevinCLydon over 4 years ago
Labels: refactor

#93 - Add explicit types to variables

Issue - State: open - Opened by KevinCLydon over 4 years ago
Labels: refactor

#92 - Move DBs over to CloudSQL

Issue - State: open - Opened by KevinCLydon over 4 years ago
Labels: Infrastructure

#91 - Switch email sending functionality to use sendgrid

Issue - State: open - Opened by KevinCLydon over 4 years ago
Labels: enhancement

#91 - Switch email sending functionality to use sendgrid

Issue - State: open - Opened by KevinCLydon over 4 years ago
Labels: enhancement

#90 - Look for a better way to check existence of git repos

Issue - State: open - Opened by KevinCLydon over 4 years ago

#90 - Look for a better way to check existence of git repos

Issue - State: open - Opened by KevinCLydon over 4 years ago

#89 - Refactor functions in the models modules for organization/simplicity

Issue - State: open - Opened by KevinCLydon over 4 years ago
Labels: refactor

#88 - Set up prod server for Methods folks for Beta Release.

Issue - State: closed - Opened by jonn-smith over 4 years ago - 1 comment

#87 - Complete Software Description Document

Issue - State: open - Opened by jonn-smith over 4 years ago

#86 - Add User's Guide for how to run tests with CARROT

Issue - State: closed - Opened by jonn-smith over 4 years ago - 1 comment
Labels: documentation

#85 - More sophisticated search options for the get mappings

Issue - State: open - Opened by KevinCLydon over 4 years ago

#85 - More sophisticated search options for the get mappings

Issue - State: open - Opened by KevinCLydon over 4 years ago

#84 - Building docker images from arbitrary commits

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago

#82 - Add support for WDL version 1.0

Issue - State: closed - Opened by KevinCLydon over 4 years ago

#82 - Add support for WDL version 1.0

Issue - State: closed - Opened by KevinCLydon over 4 years ago

#81 - Add option to include gcloud auth info in requests to google APIs

Issue - State: open - Opened by KevinCLydon over 4 years ago - 1 comment

#81 - Add option to include gcloud auth info in requests to google APIs

Issue - State: open - Opened by KevinCLydon over 4 years ago - 1 comment

#80 - Set up Codecov

Issue - State: open - Opened by KevinCLydon over 4 years ago
Labels: Infrastructure

#79 - Subscriptions for Tests/Templates/Pipelines and email notifications upon run completion

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment

#79 - Subscriptions for Tests/Templates/Pipelines and email notifications upon run completion

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment

#75 - Store generated wrapper WDL somewhere

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 4 comments
Labels: enhancement

#75 - Store generated wrapper WDL somewhere

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 4 comments
Labels: enhancement

#74 - Expand run status to differentiate between carrot and cromwell successes and failures

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: Feature

#74 - Expand run status to differentiate between carrot and cromwell successes and failures

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: Feature

#73 - Remove requirement for input names and result keys to be prefixed with test name

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: Feature

#73 - Remove requirement for input names and result keys to be prefixed with test name

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: Feature

#72 - Cleanup stuff for the alpha release

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago

#71 - Kl fix docker compose issue65

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago

#70 - Fixed WDL parsing issue where comments can mess it up

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago

#70 - Fixed WDL parsing issue where comments can mess it up

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago

#69 - Add input validation to Test/Run creation

Issue - State: open - Opened by KevinCLydon over 4 years ago
Labels: enhancement

#69 - Add input validation to Test/Run creation

Issue - State: open - Opened by KevinCLydon over 4 years ago
Labels: enhancement

#68 - WDL parser extracts workflow name incorrectly if the word 'workflow' appears in comments

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: bug

#67 - I fixed the thing I broke

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment

#67 - I fixed the thing I broke

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment

#66 - Improve WDL parsing to remove `in_` and `out_` naming restrictions for inputs and outputs

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: enhancement

#66 - Improve WDL parsing to remove `in_` and `out_` naming restrictions for inputs and outputs

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: enhancement

#65 - Fix docker-compose files now that uuid postgres extension isn't in a migration

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: bug

#65 - Fix docker-compose files now that uuid postgres extension isn't in a migration

Issue - State: closed - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: bug

#64 - Add step in output processing to transfer files to results bucket

Issue - State: open - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: Feature

#64 - Add step in output processing to transfer files to results bucket

Issue - State: open - Opened by KevinCLydon over 4 years ago - 1 comment
Labels: Feature

#63 - You can run tests now

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago

#63 - You can run tests now

Pull Request - State: closed - Opened by KevinCLydon over 4 years ago

#62 - Refactor functions in routes module for organization/simplicity

Issue - State: open - Opened by KevinCLydon over 4 years ago
Labels: refactor

#62 - Refactor functions in routes module for organization/simplicity

Issue - State: open - Opened by KevinCLydon over 4 years ago
Labels: refactor

#61 - Validate WDLs when a user specifies them

Issue - State: closed - Opened by jonn-smith over 4 years ago - 1 comment
Labels: Feature

#61 - Validate WDLs when a user specifies them

Issue - State: closed - Opened by jonn-smith over 4 years ago - 1 comment
Labels: Feature

#60 - Some sort of integration testing for the API versioning

Issue - State: open - Opened by KevinCLydon almost 5 years ago

#59 - REST mapping for running tests

Issue - State: closed - Opened by KevinCLydon almost 5 years ago - 1 comment
Labels: Feature

#58 - Add command line flags for setting config variables

Issue - State: open - Opened by KevinCLydon almost 5 years ago
Labels: enhancement

#57 - Modified app routes to be prefixed with /api/v1/ for versioning purposes

Pull Request - State: closed - Opened by KevinCLydon almost 5 years ago - 1 comment

#56 - Added docker files for running/testing and travis config

Pull Request - State: closed - Opened by KevinCLydon almost 5 years ago - 2 comments

#55 - Add support for WDLs that use other WDLs to define tasks / sub-workflows.

Issue - State: closed - Opened by jonn-smith almost 5 years ago - 1 comment
Labels: Feature

#54 - Add versioning to REST API

Issue - State: closed - Opened by KevinCLydon almost 5 years ago
Labels: Feature

#53 - Dockerfile(s) for running CARROT

Issue - State: closed - Opened by KevinCLydon almost 5 years ago
Labels: Infrastructure

#52 - Unit tests for DB operations and REST mappings

Pull Request - State: closed - Opened by KevinCLydon almost 5 years ago - 3 comments

#51 - Add command line tool for running migrations

Issue - State: open - Opened by KevinCLydon almost 5 years ago
Labels: CLI, Feature

#50 - Base code and first parts of REST API

Pull Request - State: closed - Opened by KevinCLydon almost 5 years ago - 4 comments

#49 - Better feedback on errors from REST mappings

Issue - State: open - Opened by KevinCLydon almost 5 years ago - 2 comments
Labels: Feature

#48 - Unit testing for diesel functions and REST mappings

Issue - State: closed - Opened by KevinCLydon almost 5 years ago
Labels: Feature

#47 - Unification of tests and featured workspace datasets

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: enhancement, CARROT 3.0

#46 - Terra integration

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: enhancement, CARROT 3.0

#45 - Machine learning hyperparameter optimization / testing

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: enhancement, CARROT 2.0

#44 - Custom visualization of runs / custom report generation

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: enhancement, CARROT 2.0

#43 - Custom notifications for results

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: enhancement, CARROT 2.0

#42 - Migrate tests to use single unified, curated data set

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: enhancement, CARROT 2.0

#41 - CARROT 1.0 Release

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: Epic, Feature

#40 - UI / UX / Report beatification

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: Web GUI, Feature

#39 - In Failure Reports Include context from logs for error provenance

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: Feature, Reports

#38 - Track and report cost information from Google for each run

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: Feature, Reports

#37 - Track and report performance information from Google for each run

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: Feature, Reports

#36 - Links to results from github

Issue - State: closed - Opened by jonn-smith almost 5 years ago - 1 comment
Labels: Feature, Infrastructure

#35 - GitHub webhook: #testsuite (or similar)

Issue - State: closed - Opened by jonn-smith almost 5 years ago
Labels: Feature, Infrastructure

#34 - Public front-end for displaying reports outside the Broad

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: Security, Web GUI, Feature

#33 - Create PUBLIC infrastructure

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: Security, Feature, Infrastructure

#32 - PreRelease Features

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: Epic, Feature

#31 - Support for building docker images from code for tests

Issue - State: closed - Opened by jonn-smith almost 5 years ago
Labels: Feature

#30 - Generate historical reports from all runs of a pipeline with visualizations

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: Feature, Reports

#29 - Generate reports from single runs with visualizations

Issue - State: closed - Opened by jonn-smith almost 5 years ago - 1 comment
Labels: Feature, Reports

#28 - Web GUI to Inspect historical run results

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: Web GUI, Feature

#27 - Web GUI to Inspect individual run results

Issue - State: open - Opened by jonn-smith almost 5 years ago
Labels: Web GUI, Feature