Ecosyste.ms: Issues

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GitHub / brisvag/blik issues and pull requests

#183 - ci(dependabot): bump codecov/codecov-action from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#182 - switch to nanometers

Issue - State: open - Opened by brisvag 3 months ago

#181 - Add simple widget for rotating particles

Pull Request - State: closed - Opened by brisvag 6 months ago

#180 - update readme with sphere and TODO in docs

Pull Request - State: closed - Opened by brisvag 6 months ago

#179 - Sphere/vescicle picking

Pull Request - State: closed - Opened by brisvag 6 months ago
Labels: enhancement

#178 - Update tutorial

Issue - State: open - Opened by brisvag 7 months ago

#177 - Temp fix for napari bug, add test to catch it

Pull Request - State: closed - Opened by brisvag 7 months ago

#176 - add sample data using HIV dataset

Pull Request - State: closed - Opened by brisvag 7 months ago

#175 - Add units and axis labels

Pull Request - State: closed - Opened by brisvag 7 months ago

#174 - use contributable menus from napari 0.5.0

Pull Request - State: closed - Opened by brisvag 7 months ago

#173 - I can't open a simple star

Issue - State: closed - Opened by kimdn 7 months ago - 1 comment

#172 - fix test warnings

Pull Request - State: closed - Opened by brisvag 8 months ago

#171 - Add ability to use a volumetric segmentation to create surfaces

Pull Request - State: closed - Opened by brisvag 8 months ago

#170 - gaussian filter has no "Run" button

Issue - State: closed - Opened by dmichalak 8 months ago - 2 comments

#169 - install error using Napari GUI

Issue - State: closed - Opened by JoeBeton 9 months ago - 7 comments

#168 - ci(dependabot): bump peaceiris/actions-gh-pages from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#167 - remove edge_width for points layer

Pull Request - State: closed - Opened by McHaillet 10 months ago - 9 comments

#166 - ci(dependabot): bump softprops/action-gh-release from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#165 - colouring points by data attribute

Issue - State: closed - Opened by McHaillet 11 months ago - 4 comments

#164 - out of slice fading of point and orientation layer

Issue - State: closed - Opened by McHaillet 11 months ago - 2 comments

#163 - ci(dependabot): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#162 - Fix particle layers clashing when created by different tools

Pull Request - State: closed - Opened by brisvag about 1 year ago

#161 - Fix interpolation and spline issues

Pull Request - State: closed - Opened by brisvag about 1 year ago - 1 comment

#160 - allow writing tbl files

Pull Request - State: closed - Opened by brisvag about 1 year ago - 1 comment

#159 - Fix failing docs deploy

Pull Request - State: closed - Opened by brisvag about 1 year ago - 1 comment

#158 - Added .rec extensions to whitelist

Pull Request - State: closed - Opened by rdrighetto about 1 year ago - 3 comments

#157 - Suggestion: show tomograms in the same orientation as IMOD

Issue - State: open - Opened by rdrighetto about 1 year ago - 3 comments

#156 - Minor issue: expected MRC file extension

Issue - State: closed - Opened by rdrighetto about 1 year ago - 1 comment

#155 - ci(dependabot): bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#154 - ci(dependabot): bump aganders3/headless-gui from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#152 - ci(dependabot): bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#151 - Some leftover issues

Pull Request - State: closed - Opened by brisvag over 1 year ago

#150 - Fix orientations defaults and related IO

Pull Request - State: closed - Opened by brisvag over 1 year ago - 1 comment

#149 - use self-dependency for extras

Pull Request - State: closed - Opened by brisvag over 1 year ago

#148 - Readd CI and fix issues

Pull Request - State: closed - Opened by brisvag over 1 year ago

#147 - switch to pyrepo and change build system

Pull Request - State: closed - Opened by brisvag over 1 year ago

#146 - Changed repo ownership

Pull Request - State: closed - Opened by brisvag over 1 year ago

#145 - Some readme changes

Pull Request - State: closed - Opened by brisvag over 1 year ago

#144 - Use new poseset model

Pull Request - State: closed - Opened by brisvag over 1 year ago - 1 comment

#143 - reducing coordinate opacity makes black dots on the image layer

Issue - State: open - Opened by McHaillet over 1 year ago - 12 comments

#142 - issue with star file reading?

Issue - State: closed - Opened by McHaillet over 1 year ago - 7 comments

#141 - saving star file does not save pixel size correctly

Issue - State: closed - Opened by brisvag over 1 year ago - 1 comment

#140 - saving files should add extension if needed

Issue - State: closed - Opened by brisvag over 1 year ago

#139 - Surface picking

Pull Request - State: closed - Opened by brisvag almost 2 years ago - 1 comment

#138 - Add hdf reader

Pull Request - State: closed - Opened by brisvag almost 2 years ago

#137 - Simple particle picker

Pull Request - State: closed - Opened by brisvag almost 2 years ago - 1 comment

#136 - fix vector generation

Pull Request - State: closed - Opened by brisvag almost 2 years ago - 1 comment

#135 - ci(dependabot): bump actions/setup-python from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#134 - ci(dependabot): bump codecov/codecov-action from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#133 - Small changes for napari 0.4.17

Pull Request - State: closed - Opened by brisvag about 2 years ago - 1 comment

#132 - Update to using cryotypes and cryohub and new machinery.

Pull Request - State: closed - Opened by brisvag over 2 years ago - 1 comment

#131 - Failed to load mrc

Issue - State: closed - Opened by jdeschamps over 2 years ago - 9 comments

#130 - Dependency issues

Issue - State: closed - Opened by jdeschamps over 2 years ago - 2 comments

#129 - Use the new cryotypes

Pull Request - State: closed - Opened by brisvag over 2 years ago

#128 - correct link to image

Pull Request - State: closed - Opened by haesleinhuepf almost 3 years ago - 1 comment

#127 - Images

Issue - State: closed - Opened by brisvag almost 3 years ago - 4 comments
Labels: documentation

#126 - Update packaging and CI

Pull Request - State: closed - Opened by brisvag almost 3 years ago - 1 comment

#125 - Napari plugin

Pull Request - State: closed - Opened by brisvag about 3 years ago - 3 comments

#124 - ready to run containers

Pull Request - State: closed - Opened by truatpasteurdotfr about 3 years ago

#123 - update readme

Pull Request - State: closed - Opened by brisvag about 3 years ago - 1 comment

#122 - Lazy loading with dask

Pull Request - State: closed - Opened by brisvag about 3 years ago - 2 comments

#121 - failed reading of star file

Issue - State: closed - Opened by alisterburt over 3 years ago - 1 comment
Labels: bug

#120 - Use dask

Issue - State: closed - Opened by brisvag over 3 years ago - 5 comments

#119 - License and CLI updates, bump deps

Pull Request - State: closed - Opened by brisvag over 3 years ago - 3 comments

#118 - update name in workflows

Pull Request - State: closed - Opened by brisvag over 3 years ago

#117 - Multi dataset

Pull Request - State: closed - Opened by brisvag over 3 years ago

#116 - [WIP] Generalize 3D

Pull Request - State: closed - Opened by brisvag over 3 years ago

#115 - new logo

Pull Request - State: closed - Opened by brisvag over 3 years ago

#114 - Blik

Pull Request - State: closed - Opened by brisvag over 3 years ago

#113 - delay imports for speedup

Pull Request - State: closed - Opened by brisvag over 3 years ago - 2 comments

#112 - [WIP] Particle mesh depictor

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#111 - updated tocs to jupyterbook 0.11

Pull Request - State: closed - Opened by brisvag over 3 years ago

#110 - fixed workflows

Pull Request - State: closed - Opened by brisvag over 3 years ago

#109 - Pushing all to master

Pull Request - State: closed - Opened by brisvag over 3 years ago

#108 - Auto ndim vis

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#107 - removed xarray

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#106 - added no-show flag

Pull Request - State: closed - Opened by brisvag over 3 years ago

#105 - sphereblock is now new-style multiblock

Pull Request - State: closed - Opened by brisvag over 3 years ago - 3 comments

#104 - added keybindings for next/previous volume

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#101 - Improve io

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#100 - fix star pixel size

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#99 - Particle mesh depictor

Pull Request - State: closed - Opened by brisvag over 3 years ago - 4 comments

#98 - Fixed Meshblock

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#97 - Documentation

Issue - State: closed - Opened by brisvag over 3 years ago

#96 - [WIP] Release stuff

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#95 - More tests

Pull Request - State: closed - Opened by brisvag over 3 years ago

#94 - protect properties from changes

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#93 - Improved default repr

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#92 - Separated concepts of parent and view

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#91 - Remove non-visualisation code

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#90 - Fix relion shifts

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#89 - Import times are SLOW

Issue - State: closed - Opened by brisvag over 3 years ago - 3 comments

#88 - Clean up non-visualization code

Issue - State: closed - Opened by brisvag over 3 years ago

#87 - automatically add scale bar with peepingtom unit

Pull Request - State: closed - Opened by brisvag over 3 years ago - 1 comment

#86 - Updates to depiction

Pull Request - State: closed - Opened by brisvag over 3 years ago - 3 comments

#85 - Convert meshblock to a multiblock

Issue - State: closed - Opened by brisvag over 3 years ago - 1 comment

#84 - [WIP] IO updates and lazy loading

Pull Request - State: closed - Opened by brisvag almost 4 years ago - 3 comments

#83 - RELION shift handling may be incorrect

Issue - State: closed - Opened by alisterburt almost 4 years ago - 3 comments
Labels: bug

#82 - check env exposed in codecov breach

Pull Request - State: closed - Opened by brisvag almost 4 years ago - 1 comment