bridgedb/BridgeDbR issues and pull requests

#33 - Issues filtering for datasource (in Webservice, in R) and in Cytoscape?

Issue - State: open - Opened by DeniseSl22 over 1 year ago - 11 comments

#31 - Error when running the map() or maps() function

Issue - State: closed - Opened by CDoornbos over 1 year ago - 10 comments

#30 - looking into `.Rbuildignore`

Issue - State: open - Opened by egonw over 1 year ago

#29 - Add methods for IDMapper's that wrap around online services

Issue - State: open - Opened by DeniseSl22 over 1 year ago
Labels: enhancement

#28 - unable to load metabolites database (moving issue)

Issue - State: open - Opened by DeniseSl22 over 1 year ago

#27 - Update maps.R

Pull Request - State: closed - Opened by tabbassidaloii about 2 years ago

#26 - Update map.R

Pull Request - State: closed - Opened by tabbassidaloii about 2 years ago - 2 comments

#25 - Update map.R

Pull Request - State: closed - Opened by tabbassidaloii over 2 years ago

#24 - update the maps.R

Pull Request - State: closed - Opened by tabbassidaloii over 2 years ago

#23 - add metabolites to getBridgeNames()

Issue - State: open - Opened by DeniseSl22 over 2 years ago

#22 - Added rJava info

Pull Request - State: closed - Opened by DeniseSl22 over 2 years ago - 5 comments

#21 - Description is not updated in R environment

Issue - State: open - Opened by DeniseSl22 over 2 years ago

#20 - Update tutorial.Rmd

Pull Request - State: closed - Opened by tabbassidaloii over 2 years ago - 1 comment

#19 - maps() throwing java.lang.NoSuchMethodError

Issue - State: open - Opened by ff98li about 3 years ago

#18 - Write tutorial on finding secondary IDs

Issue - State: open - Opened by DeniseSl22 over 3 years ago - 1 comment

#17 - clarify that getMatchingSource() does not reflect of ID mappings are available

Issue - State: open - Opened by egonw over 3 years ago
Labels: enhancement, question

#16 - Broken links in docs

Issue - State: closed - Opened by ariutta over 3 years ago - 2 comments
Labels: bug

#15 - Regarding provenance and getProperties()

Issue - State: open - Opened by lucas-ubm over 3 years ago - 5 comments

#14 - check out Bioconductor AnnotationHub

Issue - State: open - Opened by egonw almost 4 years ago - 1 comment
Labels: enhancement

#13 - getDatabase method returns exception

Issue - State: closed - Opened by pporrasebi over 4 years ago - 8 comments
Labels: bug

#12 - Added line to add file location for manual downloads.

Pull Request - State: closed - Opened by DeniseSl22 almost 5 years ago

#11 - Textual changes, updated linkouts, added rJava instructions

Pull Request - State: closed - Opened by DeniseSl22 almost 5 years ago

#10 - How to inspect the metabolites_*.bridge file

Issue - State: open - Opened by kozo2 almost 5 years ago
Labels: enhancement

#9 - update bioschemas JSON-LD to latest draft

Issue - State: closed - Opened by egonw over 5 years ago

#8 - add link to metabolite ID mapping database collection

Issue - State: closed - Opened by egonw over 5 years ago
Labels: enhancement

#7 - getMatchingSources() output does not make sense

Issue - State: open - Opened by egonw over 5 years ago

#6 - add method for getting the attributes for genes

Issue - State: closed - Opened by egonw almost 6 years ago - 4 comments

#5 - check compile failure for Windows on BioConductor

Issue - State: closed - Opened by egonw almost 6 years ago

#4 - Use the new CRAN BiocManager

Issue - State: closed - Opened by egonw about 6 years ago - 1 comment
Labels: enhancement

#3 - introduce BioSchemas annotation to the vignette

Issue - State: closed - Opened by egonw over 6 years ago - 1 comment
Labels: enhancement, help wanted

#2 - update to BridgeDb 2.3.0

Issue - State: closed - Opened by egonw over 6 years ago
Labels: enhancement

#1 - add missing import

Issue - State: closed - Opened by egonw over 6 years ago - 1 comment
Labels: bug

Ecosyste.ms: Issues

GitHub / bridgedb/BridgeDbR issues and pull requests