Ecosyste.ms: Issues

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GitHub / brianhie/evolocity issues and pull requests

#21 - Error computing velocity embedding when providing own sequences

Issue - State: closed - Opened by DrewBarratt 4 months ago - 3 comments

#20 - fix: the embedding's mean is precomputed

Pull Request - State: closed - Opened by dongspy about 1 year ago

#17 - Error with colab notebook for nucleoprotein

Issue - State: open - Opened by Jiacheng06 about 1 year ago - 2 comments

#16 - Apply evolocity to other language models?

Issue - State: open - Opened by wangleiofficial over 1 year ago - 2 comments
Labels: enhancement

#15 - plt.gca deprecation fix

Pull Request - State: closed - Opened by seyonechithrananda almost 2 years ago - 1 comment

#14 - KeyError: 'J'

Issue - State: closed - Opened by seyonechithrananda almost 2 years ago - 3 comments

#13 - Fix bug in groupby

Pull Request - State: closed - Opened by brianhie almost 2 years ago

#12 - Random walk groupby and scipy sparse indexing

Issue - State: closed - Opened by brianhie almost 2 years ago
Labels: bug

#11 - Dev featurize seq

Pull Request - State: closed - Opened by gianhiltbrunner over 2 years ago - 1 comment

#10 - How to save results?

Issue - State: open - Opened by UronicAcid over 2 years ago - 4 comments
Labels: enhancement

#8 - errno is required when directories already exist

Issue - State: closed - Opened by jadolfbr almost 3 years ago - 1 comment
Labels: bug

#7 - Counter is not defined in preprocessing/featurize_seqs.py

Issue - State: closed - Opened by jadolfbr almost 3 years ago - 1 comment
Labels: bug

#6 - Preprocessing utils require os to be imported

Issue - State: closed - Opened by jadolfbr almost 3 years ago - 3 comments
Labels: bug

#5 - Fasta file seems to require metadata?

Issue - State: closed - Opened by jadolfbr almost 3 years ago - 3 comments
Labels: enhancement

#2 - Issues with long proteins (>1024 residues) with ESM_1b?

Issue - State: closed - Opened by salvatoreloguercio over 3 years ago - 2 comments

#1 - Update utils.py

Pull Request - State: closed - Opened by samsledje over 3 years ago - 1 comment