briandconnelly/seeds issues and pull requests

#77 - update for python 3 and 2.7

Pull Request - State: open - Opened by zamanlh almost 7 years ago

#76 - Proper Documentation with Sphinx

Issue - State: open - Opened by briandconnelly over 10 years ago

#75 - runseeds.py SIGINT Handling

Issue - State: open - Opened by briandconnelly over 10 years ago

#74 - Contrib actions need to inherit from Plugin

Issue - State: open - Opened by briandconnelly about 12 years ago

#73 - Closing File Handles

Issue - State: closed - Opened by nahumj about 12 years ago - 1 comment

#72 - Did Issue #49 Use dictwriter for data output?

Pull Request - State: open - Opened by nahumj about 12 years ago

#71 - Examples using resources

Issue - State: open - Opened by nahumj about 12 years ago - 1 comment

#70 - Specify a required version of SEEDS

Issue - State: closed - Opened by briandconnelly over 12 years ago - 1 comment

#69 - Specify SEEDS version in config file

Issue - State: closed - Opened by briandconnelly over 12 years ago - 1 comment

#68 - Specify plugin version in config file

Issue - State: open - Opened by briandconnelly over 12 years ago

#67 - Get unittest in Plugins

Issue - State: open - Opened by briandconnelly over 12 years ago - 1 comment

#66 - Stop using reserved words

Issue - State: open - Opened by briandconnelly over 12 years ago - 3 comments

#65 - Plugin Version information should be included in PrintExperimentInformation

Issue - State: closed - Opened by briandconnelly over 12 years ago

#64 - Local Plugins Should be Preferred Over Included Ones

Issue - State: closed - Opened by briandconnelly over 12 years ago

#63 - Transitions Matrix Should be Set in Population init

Issue - State: open - Opened by briandconnelly over 12 years ago

#62 - Config Validation

Issue - State: open - Opened by briandconnelly over 12 years ago - 1 comment

#61 - Action to create stack plot of cell type frequencies.

Issue - State: open - Opened by briandconnelly almost 13 years ago

#60 - makesde script

Issue - State: open - Opened by briandconnelly almost 13 years ago

#59 - Runseeds support for reading/creating container files

Issue - State: open - Opened by briandconnelly almost 13 years ago

#58 - Class and methods for reading, validating, and creating container files

Issue - State: open - Opened by briandconnelly almost 13 years ago

#57 - Define SEEDS Experiment Container File Format

Issue - State: open - Opened by briandconnelly almost 13 years ago

#56 - Edited seeds/plugins/topology/WellMixedTopology.py via GitHub

Pull Request - State: closed - Opened by zamanlh about 13 years ago - 1 comment

#55 - Actions for NormalResource

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#54 - Nearest Neighbor Implementation

Issue - State: open - Opened by briandconnelly over 13 years ago - 1 comment

#53 - Update Cell template

Issue - State: closed - Opened by briandconnelly over 13 years ago

#52 - Action to draw graph using nx/pyplot draw stuff.

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#51 - Generic Topologies for Resources or Population Interactions

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#50 - Option to include Experiment uuid to Actions

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#49 - Use dictwriter for data output?

Issue - State: open - Opened by briandconnelly over 13 years ago

#48 - header parameter for Actions

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#47 - Rename examples directory to experiments

Issue - State: closed - Opened by briandconnelly over 13 years ago

#46 - Type argument for get_plugin() in PluginManager

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#45 - Type argument for get_plugin() in PluginManager

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#44 - Like Resources, Actions should be [Action:label] to allow many instances.

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#43 - Rename World to Experiment

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#42 - Remove CellManager

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#41 - Fix issues with NormalResourceActions. Getting resource from Cell.

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#40 - Actions for SquareResource

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#39 - Actions for SineResource

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#38 - Quasispecies Cell type

Pull Request - State: closed - Opened by zamanlh over 13 years ago

#37 - Bitstring Quasispecies Model

Issue - State: closed - Opened by zamanlh over 13 years ago - 1 comment

#36 - Ability to query ActionManager for available plugins.

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#35 - List of actions should be a priority queue

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#34 - Remove Snapshot stuff from base system

Issue - State: closed - Opened by briandconnelly over 13 years ago - 4 comments

#33 - teardown functionality everywhere

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#32 - Make the world an iterator?

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#31 - Data Writing Layer

Issue - State: open - Opened by briandconnelly over 13 years ago

#30 - Ability to save distribution

Issue - State: open - Opened by briandconnelly over 13 years ago

#29 - Update plot_density to read un-commented header

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#28 - Rename ResourceActions.py

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#27 - Remove comments from headers in CSV files

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#26 - Property of each resource to specify granularity

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#25 - Create a Misc or Tools file

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#24 - Include Cell, Topology, Action, etc. Templates in Distribution

Issue - State: closed - Opened by briandconnelly over 13 years ago - 3 comments

#23 - Resource Types as Plugins

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#22 - Remove Topology-, and Action-Managers. Use plugins.

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#21 - Actions to set Resource properties of individual areas (make patches)

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#20 - Resource Actions

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#19 - Ability to flag resources as available or not available

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#18 - NormalResource Outflow

Issue - State: closed - Opened by briandconnelly over 13 years ago - 2 comments

#17 - De-Couple Resources from Nodes/Cells

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#16 - Additional Resource Types

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#15 - Fix PrintResourceStats Action

Issue - State: closed - Opened by briandconnelly over 13 years ago

#14 - Signal Handling for runseeds.py

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#13 - [quick fix] ResourceManager.py needs an "import re" line

Issue - State: closed - Opened by zamanlh over 13 years ago - 1 comment

#12 - move runseeds.py to argparse

Issue - State: closed - Opened by briandconnelly over 13 years ago - 4 comments

#11 - Cartesian Topology potential speedup

Issue - State: closed - Opened by zamanlh over 13 years ago - 3 comments

#10 - Action for Snapshot creation, loading?

Issue - State: closed - Opened by briandconnelly over 13 years ago - 2 comments

#9 - Topology.get_neighbors() should take a cell instead of a node

Issue - State: closed - Opened by zamanlh over 13 years ago - 1 comment

#8 - Potential print action idea

Issue - State: open - Opened by zamanlh over 13 years ago

#7 - Add comments line(s) to generated config files saying when/how they were created

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#6 - Stack trace from weird one time crash

Issue - State: closed - Opened by zamanlh over 13 years ago - 3 comments

#5 - Command line parameter parser can't read comma-separated lists of values (e.g. for plugin_dirs)

Issue - State: closed - Opened by briandconnelly over 13 years ago - 3 comments

#4 - Needed: Environment variable storing the paths of plugin directories

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

#3 - Command line setting of neighborhood size not working

Issue - State: closed - Opened by zamanlh over 13 years ago - 2 comments

#2 - Create a Game Theory Cell

Issue - State: open - Opened by briandconnelly over 13 years ago - 2 comments

#1 - Create a Well-Mixed topology

Issue - State: closed - Opened by briandconnelly over 13 years ago - 1 comment

GitHub / briandconnelly/seeds issues and pull requests