Ecosyste.ms: Issues

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GitHub / brian-team/brian2modelfitting issues and pull requests

#76 - Fix efel units

Pull Request - State: closed - Opened by mstimberg 12 months ago

#75 - Update build infrastructure and import/dependencies

Pull Request - State: closed - Opened by mstimberg 12 months ago

#74 - Issue with Multi-run of Hodgkin-Huxley Example

Issue - State: open - Opened by michmgee about 1 year ago - 3 comments

#73 - Make dependencies like sbi optional

Issue - State: closed - Opened by mstimberg about 1 year ago
Labels: enhancement

#72 - Improve the simulation-based inference model

Issue - State: open - Opened by bdevans over 1 year ago

#71 - Implement multi-objective optimisation

Issue - State: open - Opened by bdevans over 1 year ago

#70 - Enable the user to define features for model fitting

Issue - State: open - Opened by bdevans over 1 year ago

#69 - Compare model fitting algorithms

Issue - State: open - Opened by bdevans over 1 year ago

#68 - Update nevergrad version

Pull Request - State: closed - Opened by mstimberg over 2 years ago - 1 comment

#67 - dummy pull request to debug efel issues

Pull Request - State: closed - Opened by mstimberg almost 3 years ago

#66 - Remove lmfit

Pull Request - State: closed - Opened by mstimberg almost 3 years ago - 1 comment

#65 - Fix handling of multiple variables with differing t_start/t_weights in refine

Pull Request - State: closed - Opened by mstimberg about 3 years ago - 3 comments

#64 - GSoC 2021: Support of the simulation-based inference with the model fitting toolbox

Pull Request - State: closed - Opened by akapet00 about 3 years ago - 2 comments

#63 - Update tests

Pull Request - State: closed - Opened by akapet00 about 3 years ago

#62 - Enable GPU support

Issue - State: closed - Opened by akapet00 about 3 years ago
Labels: enhancement

#61 - enable gpu support

Pull Request - State: closed - Opened by akapet00 about 3 years ago - 1 comment
Labels: enhancement

#60 - Add spike support

Pull Request - State: closed - Opened by akapet00 about 3 years ago - 1 comment

#59 - Multiple output var support

Pull Request - State: closed - Opened by akapet00 about 3 years ago - 1 comment

#58 - Enhance posterior viz

Pull Request - State: closed - Opened by akapet00 about 3 years ago - 1 comment

#57 - Refactor `Inferencer`/`Fitter`

Issue - State: open - Opened by mstimberg about 3 years ago

#56 - Add documentation for sbi

Issue - State: closed - Opened by mstimberg about 3 years ago

#55 - Add tests for sbi

Issue - State: closed - Opened by mstimberg about 3 years ago

#54 - Support spikes in sbi

Issue - State: closed - Opened by mstimberg about 3 years ago
Labels: enhancement

#53 - Support multiple output variables for sbi

Issue - State: closed - Opened by mstimberg about 3 years ago
Labels: enhancement

#52 - Add store load functionality

Pull Request - State: closed - Opened by akapet00 over 3 years ago

#51 - Inestigate additional visualization techniques of parameter space

Issue - State: closed - Opened by akapet00 over 3 years ago
Labels: enhancement

#50 - Enable all inference methods included in `sbi`

Issue - State: closed - Opened by akapet00 over 3 years ago - 2 comments

#49 - Add sbi wrapper class

Pull Request - State: closed - Opened by akapet00 over 3 years ago - 5 comments

#48 - Generalize `FeatureMetric`

Issue - State: open - Opened by mstimberg over 3 years ago - 1 comment
Labels: enhancement

#47 - Split up simulations if necessary

Issue - State: closed - Opened by mstimberg over 3 years ago - 2 comments

#46 - Store simulation/training results

Issue - State: closed - Opened by mstimberg over 3 years ago - 4 comments

#45 - Investigate using dimensionality-reduction methods on outputs

Issue - State: closed - Opened by mstimberg over 3 years ago - 7 comments

#44 - Create class to wrap first stages of sbi

Issue - State: closed - Opened by mstimberg over 3 years ago - 1 comment

#42 - Fix: Fitter exception message #41

Pull Request - State: closed - Opened by eslam69 over 3 years ago - 7 comments

#41 - Typo in the exception message at the assertion of optimizer's parent class

Issue - State: closed - Opened by eslam69 over 3 years ago - 1 comment

#40 - Add DragonFly optimizer Example

Pull Request - State: open - Opened by eslam69 over 3 years ago - 4 comments

#39 - GSoC Example

Pull Request - State: open - Opened by pb663 over 3 years ago

#38 - Preliminary support for multi-objective optimization

Pull Request - State: closed - Opened by mstimberg almost 4 years ago - 15 comments

#37 - Deal with minimal population sizes and budgets in Nevergrad

Pull Request - State: closed - Opened by mstimberg about 4 years ago

#36 - Support dynamical coupling models

Pull Request - State: closed - Opened by mstimberg over 4 years ago - 3 comments

#35 - nevegrad 'instrumentation' problem

Issue - State: closed - Opened by gvignoud over 4 years ago - 2 comments

#34 - [MRG] Fitter.generate for multiple variables

Pull Request - State: closed - Opened by mstimberg over 4 years ago - 3 comments

#33 - [MRG] provide access to target variable in model

Pull Request - State: closed - Opened by mstimberg over 4 years ago - 1 comment

#32 - Make Gamma factor calculation more consistent

Pull Request - State: closed - Opened by mstimberg over 4 years ago

#31 - [MRG] Temporal weighting

Pull Request - State: closed - Opened by mstimberg over 4 years ago - 13 comments

#30 - [WIP] Display/return quantities with units

Pull Request - State: closed - Opened by mstimberg over 4 years ago - 3 comments

#29 - [MRG] TraceFitter.refine with calculated gradient

Pull Request - State: closed - Opened by mstimberg over 4 years ago

#28 - [MRG] Add a refine function that uses lmfit.minimize

Pull Request - State: closed - Opened by mstimberg over 4 years ago - 32 comments

#27 - Bug with last merge

Issue - State: closed - Opened by romainbrette over 4 years ago - 2 comments
Labels: bug

#26 - Do not use Nevergrad recommendation by default

Pull Request - State: closed - Opened by mstimberg over 4 years ago - 1 comment

#25 - Interface with sequential optimization algorithms

Issue - State: closed - Opened by romainbrette over 4 years ago - 2 comments
Labels: enhancement

#24 - Investigate bug with nevergrad 0.3

Issue - State: closed - Opened by mstimberg over 4 years ago - 1 comment
Labels: bug

#23 - Dynamical coupling

Issue - State: closed - Opened by romainbrette over 4 years ago - 1 comment
Labels: enhancement

#22 - Temporal weighting of error

Issue - State: closed - Opened by romainbrette over 4 years ago
Labels: enhancement

#21 - 10 times more samples as requested

Issue - State: closed - Opened by romainbrette over 4 years ago - 2 comments
Labels: bug

#20 - Tools for analyzing results

Issue - State: open - Opened by romainbrette over 4 years ago
Labels: enhancement

#19 - Online display of best parameters is not readable

Issue - State: closed - Opened by romainbrette over 4 years ago
Labels: enhancement

#18 - Units of results

Issue - State: closed - Opened by romainbrette almost 5 years ago - 1 comment

#17 - [MRG] Avoid DeprecationWarning when importing skopt/sklearn

Pull Request - State: closed - Opened by mstimberg almost 5 years ago - 2 comments

#16 - Nevergrad's recommendation can give wrong result

Issue - State: closed - Opened by mstimberg almost 5 years ago - 4 comments
Labels: bug, question

#15 - [MRG] Fix fit/generate/fit issue

Pull Request - State: closed - Opened by mstimberg almost 5 years ago

#14 - Cannot run another `fit` after `generate`

Issue - State: closed - Opened by mstimberg almost 5 years ago
Labels: bug

#13 - Minor fixes

Pull Request - State: closed - Opened by mstimberg about 5 years ago

#12 - Add tests for FeatureMetric and slightly refactor it

Pull Request - State: closed - Opened by mstimberg about 5 years ago

#11 - Fix doc references and rename `simulation` module

Pull Request - State: closed - Opened by mstimberg about 5 years ago

#10 - Simplify package

Pull Request - State: closed - Opened by mstimberg about 5 years ago

#9 - Change shapes of arguments for get_features/get_errors

Pull Request - State: closed - Opened by mstimberg about 5 years ago - 1 comment

#8 - Wrap string equations into Equations objects

Issue - State: closed - Opened by mstimberg about 5 years ago

#7 - Use more specific exception types

Issue - State: closed - Opened by mstimberg about 5 years ago - 1 comment

#6 - Fix string continuation in exceptions

Issue - State: closed - Opened by mstimberg about 5 years ago

#5 - Default values for metric/optimizer

Issue - State: open - Opened by mstimberg about 5 years ago - 1 comment

#4 - Add option to discard a part of a simulation

Issue - State: closed - Opened by mstimberg about 5 years ago

#3 - Inconsistent handling between "best result" and error

Issue - State: closed - Opened by mstimberg about 5 years ago

#2 - GSoC 2019: Model Fitting

Pull Request - State: closed - Opened by alTeska about 5 years ago - 2 comments

#1 - Merging with brian2tools

Issue - State: closed - Opened by romainbrette over 8 years ago - 6 comments
Labels: question