Ecosyste.ms: Issues

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GitHub / brettc/partitionfinder issues and pull requests

#40 - add a branchlengths=equal option

Issue - State: closed - Opened by roblanf almost 10 years ago - 2 comments

#39 - building phyml from source

Issue - State: closed - Opened by biologyguy almost 10 years ago - 6 comments

#38 - Consider packaging / distribution for 2.0 (maybe using a Conda recipe)

Issue - State: open - Opened by brettc almost 10 years ago - 2 comments

#37 - add support for amino acid alignments with iterative k-means

Issue - State: closed - Opened by pbfrandsen almost 10 years ago - 2 comments

#36 - Include a --seed option

Issue - State: closed - Opened by roblanf almost 10 years ago - 16 comments

#35 - Cache site rates?

Issue - State: closed - Opened by pbfrandsen almost 10 years ago - 5 comments

#34 - Allow for relocation of output folder

Issue - State: open - Opened by brettc almost 10 years ago

#33 - Check error handling in threading

Issue - State: open - Opened by brettc almost 10 years ago

#32 - Feature/morphology2

Pull Request - State: open - Opened by wrightaprilm almost 10 years ago - 9 comments

#31 - Use cython for rate estimation

Issue - State: closed - Opened by pbfrandsen almost 10 years ago - 22 comments

#30 - Keep (some) phylofiles

Issue - State: closed - Opened by maxmaronna almost 10 years ago - 2 comments

#30 - Keep (some) phylofiles

Issue - State: closed - Opened by maxmaronna almost 10 years ago - 2 comments

#29 - output methods text and suggested citations

Issue - State: closed - Opened by roblanf almost 10 years ago - 2 comments

#28 - Problem with installation

Issue - State: closed - Opened by ghost almost 10 years ago - 1 comment

#27 - Test morphology partitionfinder

Issue - State: closed - Opened by wrightaprilm almost 10 years ago - 1 comment

#26 - clean up model list

Issue - State: closed - Opened by roblanf almost 10 years ago - 1 comment

#25 - Add support for sequential analyses over a model list

Issue - State: closed - Opened by roblanf almost 10 years ago - 2 comments

#24 - Feature request: mrBayes block generation?

Issue - State: closed - Opened by miltontan almost 10 years ago - 4 comments

#23 - Add support for additional RAxML models

Issue - State: closed - Opened by roblanf almost 10 years ago - 5 comments

#22 - Abandon BIC and AIC, discuss

Issue - State: closed - Opened by roblanf almost 10 years ago - 11 comments

#21 - Update PhyML version

Issue - State: closed - Opened by roblanf almost 10 years ago - 1 comment

#20 - Update RAxML version

Issue - State: closed - Opened by roblanf almost 10 years ago - 4 comments

#19 - TIGER rates

Issue - State: closed - Opened by roblanf almost 10 years ago - 15 comments

#18 - generate likelihoods for "fabricated subsets" in the kmeans algorithm

Issue - State: closed - Opened by pbfrandsen almost 10 years ago - 4 comments

#17 - support latest phyml version

Issue - State: closed - Opened by wookietreiber about 10 years ago - 1 comment

#16 - fixes #15

Pull Request - State: closed - Opened by wookietreiber about 10 years ago - 2 comments

#14 - re-instate .cfg tests

Issue - State: closed - Opened by roblanf over 10 years ago - 1 comment

#13 - Order of clustering steps can differ on different machines, even in reruns

Issue - State: open - Opened by cmayer almost 11 years ago - 1 comment

#12 - Add subset info to output

Issue - State: closed - Opened by roblanf almost 11 years ago - 1 comment

#11 - Catch segmentation faults from RAxML / PhyML

Issue - State: open - Opened by roblanf almost 11 years ago

#10 - More advice on RAxML versions

Issue - State: closed - Opened by roblanf almost 11 years ago - 1 comment

#9 - Big greedy runs fail at ~50%

Issue - State: closed - Opened by roblanf almost 11 years ago - 2 comments

#8 - GSOC changes by Paul

Pull Request - State: closed - Opened by brettc about 11 years ago

#7 - heuristic searches with 1 subset

Issue - State: closed - Opened by roblanf over 11 years ago - 1 comment

#6 - very small datablocks with RAxML

Issue - State: open - Opened by roblanf over 11 years ago

#5 - Memory usage

Issue - State: closed - Opened by roblanf over 12 years ago

#4 - long file names

Issue - State: closed - Opened by roblanf over 13 years ago - 8 comments

#3 - Alignment parsing

Issue - State: closed - Opened by roblanf over 13 years ago - 7 comments

#2 - models

Issue - State: closed - Opened by roblanf over 13 years ago - 2 comments

#1 - semi colons

Issue - State: closed - Opened by roblanf over 13 years ago - 4 comments