Ecosyste.ms: Issues

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GitHub / brentp/slivar issues and pull requests

#35 - Slivar for VCF Filtering

Issue - State: closed - Opened by nroak over 5 years ago - 9 comments

#34 - Tsv csq cols

Pull Request - State: closed - Opened by brentp over 5 years ago

#33 - slivar tsv: allow exporting CSQ fields

Issue - State: closed - Opened by brentp over 5 years ago

#32 - Compound het screening in samples without trio information

Issue - State: closed - Opened by syouligan over 5 years ago - 6 comments

#31 - Feature Request: Restrict Analysis to BED Regions/ Locations

Issue - State: closed - Opened by nroak over 5 years ago - 3 comments

#30 - Header in PED file

Issue - State: closed - Opened by adw222 over 5 years ago - 1 comment

#29 - optimization: allow skipping variants where all samples are hom-ref or unknown

Issue - State: closed - Opened by brentp over 5 years ago - 1 comment

#28 - Add uniprot gene descriptions to tsv report

Issue - State: closed - Opened by mvelinder over 5 years ago - 1 comment

#27 - SIGSEGV: Illegal storage access. (Attempt to read from nil?)

Issue - State: closed - Opened by snashraf over 5 years ago - 56 comments

#26 - Duo-del wiki error- hg19, hg38 switch

Issue - State: closed - Opened by nroak over 5 years ago - 1 comment

#25 - duo-del finds inherited deletions too

Issue - State: closed - Opened by brentp over 5 years ago - 7 comments

#24 - fix filtering for --pass-only with no trio/group/sample exressions

Issue - State: closed - Opened by brentp over 5 years ago - 1 comment

#23 - better error message for missing/bad gnotate file

Issue - State: closed - Opened by brentp over 5 years ago

#22 - allow accessing `INFO` via `variant.INFO`

Issue - State: closed - Opened by brentp over 5 years ago - 1 comment

#21 - Period (.) in INFO fields throws an error

Issue - State: closed - Opened by nroak over 5 years ago - 10 comments

#20 - Group expression: Combine all affecteds and unaffecteds for filtering

Issue - State: closed - Opened by nroak over 5 years ago - 10 comments

#19 - ENH: add summary output

Issue - State: closed - Opened by brentp over 5 years ago

#18 - Comphet dn

Pull Request - State: closed - Opened by brentp over 5 years ago

#17 - add example finding comp-het with denovo

Issue - State: closed - Opened by brentp over 5 years ago - 1 comment

#16 - Compound hets

Pull Request - State: closed - Opened by brentp over 5 years ago

#15 - add support for compound hets

Issue - State: closed - Opened by brentp over 5 years ago - 1 comment

#14 - add variant.is_multiallelic

Issue - State: closed - Opened by brentp over 5 years ago

#13 - OSX build

Issue - State: open - Opened by brentp over 5 years ago - 5 comments
Labels: help wanted

#12 - Dev

Pull Request - State: closed - Opened by brentp over 5 years ago

#11 - allow float setting float fields with expressions

Issue - State: closed - Opened by brentp over 5 years ago

#10 - Dev

Pull Request - State: closed - Opened by brentp over 5 years ago

#9 - recessive_func

Issue - State: closed - Opened by snashraf over 5 years ago - 11 comments

#8 - make zips for commonly-used annotations

Issue - State: closed - Opened by brentp over 5 years ago

#7 - static build

Issue - State: closed - Opened by brentp over 5 years ago - 1 comment

#6 - Installation help

Issue - State: closed - Opened by nroak over 5 years ago - 6 comments

#5 - Add Gnotate to the latest docker image

Issue - State: closed - Opened by cvlvxi over 5 years ago - 2 comments

#4 - Vk

Pull Request - State: closed - Opened by brentp almost 6 years ago

#3 - support CSQ

Issue - State: closed - Opened by brentp almost 6 years ago - 18 comments

#2 - gnomad annotation

Issue - State: closed - Opened by brentp almost 6 years ago - 1 comment

#1 - generalize to groups

Issue - State: closed - Opened by brentp almost 6 years ago - 3 comments