brentp/combined-pvalues issues and pull requests

#41 - Missing/broken bedtools when running on HPC

Issue - State: open - Opened by krferrier 4 months ago - 1 comment

#40 - Issues running pipeline.py - no output/output is blank document

Issue - State: closed - Opened by cewim over 1 year ago - 5 comments

#39 - Installation issues

Issue - State: open - Opened by annekristin almost 2 years ago - 1 comment

#38 - code pval upon float64

Pull Request - State: closed - Opened by fchuffar almost 3 years ago - 1 comment

#37 - Option confusion for region_p

Issue - State: open - Opened by tomh1lll about 3 years ago - 3 comments

#36 - updated setup.py

Pull Request - State: closed - Opened by cameronsevern over 3 years ago

#35 - NameError after Fix #32 was pushed on September 3rd 2021

Issue - State: closed - Opened by annekristin over 3 years ago - 3 comments

#34 - IndexError: list index out of range

Issue - State: closed - Opened by mathishil almost 4 years ago - 1 comment

#33 - issue with multiprocessing on MacOS with Python3.8

Pull Request - State: open - Opened by ahryho almost 4 years ago

#32 - Manhattan Plot's chromosomes ordered as characters

Issue - State: closed - Opened by PhilBoileau over 4 years ago - 3 comments

#31 - fix for #23

Pull Request - State: closed - Opened by lardenoije over 4 years ago

#30 - Added option to specify gene table

Pull Request - State: closed - Opened by lardenoije over 4 years ago - 1 comment

#29 - Checking my understanding of option -d

Issue - State: open - Opened by qserenali over 4 years ago - 1 comment

#28 - IndexError: list index out of range

Issue - State: closed - Opened by paujedynak over 4 years ago - 3 comments

#27 - Python 3.7.7 - NameError: name 'basestring' is not defined

Issue - State: open - Opened by ggzheng over 4 years ago

#26 - ValueError: could not convert string to float: 'start'

Issue - State: open - Opened by weizhousjtu almost 5 years ago - 6 comments

#25 - Errors related to threading when running under Python 2.7

Issue - State: closed - Opened by kkellysci almost 5 years ago - 1 comment

#24 - AttributeError: module 'main' has no attribute 'spec'

Issue - State: open - Opened by paujedynak almost 5 years ago - 4 comments

#23 - Kept TIMEOUT_MAX error.

Issue - State: closed - Opened by zh9118 almost 5 years ago - 4 comments

#22 - raise Exception('need header in p-value file to run filter')

Issue - State: closed - Opened by Biojenifer about 5 years ago - 3 comments

#21 - --anno option not usable (Module compatibility issue)

Issue - State: open - Opened by Lei-Guo about 5 years ago - 5 comments

#20 - ModuleNotFoundError: No module named '_common'

Issue - State: closed - Opened by Lei-Guo about 5 years ago - 6 comments

#19 - regions-t.bed left empty

Issue - State: closed - Opened by hhx037 over 5 years ago - 9 comments

#18 - runs in python3

Pull Request - State: closed - Opened by brentp almost 6 years ago

#17 - Python 3.7.3 issuing a TypeError for acf.py

Issue - State: open - Opened by parcbioinfo almost 6 years ago - 5 comments

#16 - scipy.stats chisqprob fails to import

Issue - State: closed - Opened by jenzopr almost 7 years ago - 6 comments

#15 - combined-pvalues in bioconda

Issue - State: closed - Opened by jenzopr over 7 years ago - 1 comment

#14 - better handling of regions using interlap

Pull Request - State: closed - Opened by brentp over 10 years ago

#13 - https://continuum.io/downloads

Issue - State: closed - Opened by mmoisse over 10 years ago - 1 comment

#12 - set p-values of 1 to 1-epsilon

Issue - State: closed - Opened by brentp over 10 years ago

#11 - gracefully handle input files that don't have 't', 'start', and 'end' column in filter step.

Issue - State: closed - Opened by brentp over 11 years ago

#10 - ACF based on -log10(p)

Issue - State: closed - Opened by brentp over 12 years ago

#9 - More trouble with examples/charm/run.sh

Issue - State: closed - Opened by gotgenes almost 13 years ago - 24 comments

#8 - Missing files in examples/charm/data

Issue - State: closed - Opened by gotgenes almost 13 years ago - 1 comment

#7 - try different q-values

Issue - State: closed - Opened by brentp about 13 years ago - 1 comment

#6 - create bigwig from bed

Issue - State: closed - Opened by brentp over 13 years ago - 1 comment

#5 - qq-plot

Issue - State: closed - Opened by brentp over 13 years ago - 1 comment

#4 - local ACF

Issue - State: closed - Opened by brentp over 13 years ago - 1 comment

#3 - add manhattan-plot script

Issue - State: closed - Opened by brentp over 13 years ago - 2 comments

#2 - sidak correction in region simulations.

Issue - State: closed - Opened by brentp over 13 years ago - 3 comments

#1 - acf in one pass

Issue - State: closed - Opened by brentp over 13 years ago

GitHub / brentp/combined-pvalues issues and pull requests