bowang-lab/MedSAM issues and pull requests

#224 - During inference model is not getting recognised in sam_model_registry

Issue - State: closed - Opened by bhandaripratibha06 8 months ago - 2 comments

#222 - Weights for 256x256

Issue - State: closed - Opened by ariharasudhanm 8 months ago - 1 comment

#221 - Issue with docker save

Issue - State: closed - Opened by rajpiyush18 8 months ago - 1 comment

#219 - After fine-tuning the model to obtain my own MedSAM model weights, how do I load the weights for prediction?

Issue - State: closed - Opened by tqinger 8 months ago - 1 comment

#218 - Histopathology images with text prompts

Issue - State: closed - Opened by prinshul 8 months ago - 3 comments

#217 - Training with pre-trained weights

Issue - State: closed - Opened by ariharasudhanm 8 months ago - 1 comment

#216 - error run demo

Issue - State: closed - Opened by jche058 8 months ago - 1 comment

#215 - Fine-tuning MedSam without bbox

Issue - State: closed - Opened by masih4 8 months ago - 3 comments

#214 - !pip install gives a warning in collaboration

Issue - State: closed - Opened by simonshabo 9 months ago - 1 comment

#212 - Question About Training Time

Issue - State: closed - Opened by rydeveraumn 9 months ago - 2 comments

#200 - Inference for a fine tuned model

Issue - State: closed - Opened by Yasmin-Kassim 10 months ago - 9 comments

#154 - Requests for the requirements file

Issue - State: closed - Opened by wjb00 about 1 year ago - 2 comments

#105 - Multimask output

Issue - State: closed - Opened by prinshul over 1 year ago - 3 comments

#104 - Fine-tuning for multi objects

Issue - State: closed - Opened by MLDeS over 1 year ago - 3 comments

#103 - Question - why not use SamPredictor in inference?

Issue - State: closed - Opened by karkawal over 1 year ago - 1 comment

#102 - Suggestion - Integrate MobileSAM into the pipeline for lightweight and faster inference

Issue - State: closed - Opened by mdimtiazh over 1 year ago - 1 comment
Labels: enhancement

#101 - window adjustment was missing in training and inference for abdominal CT data？

Issue - State: closed - Opened by Yuxiang1990 over 1 year ago - 1 comment

#99 - CE loss is zero

Issue - State: closed - Opened by sashkagil over 1 year ago - 3 comments
Labels: enhancement

#98 - A repetiation typo in the paper

Issue - State: closed - Opened by KaiserW over 1 year ago - 1 comment

#97 - About resize image in pre_CT.py

Issue - State: closed - Opened by gavin-ustc over 1 year ago - 2 comments

#96 - mix point and box prompt

Issue - State: closed - Opened by xiawei20161308104 over 1 year ago - 1 comment

#95 - About the perturbation of the box-coor

Issue - State: closed - Opened by xiawei20161308104 over 1 year ago - 4 comments

#94 - RuntimeError: size mis match in finetune2D

Issue - State: closed - Opened by wangyuchen333 over 1 year ago - 4 comments

#93 - b_box implementation

Issue - State: closed - Opened by sushmanthreddy over 1 year ago - 5 comments

#92 - is 'sam_vit_b_01ec64.pth' checkpoint has already pre-trained?

Issue - State: closed - Opened by alqurri77 over 1 year ago - 1 comment

#91 - Regarding pathology image code and results

Issue - State: closed - Opened by MaxQureshi over 1 year ago - 1 comment

#90 - prompt with points

Issue - State: closed - Opened by Once88 over 1 year ago - 4 comments

#89 - onnx support

Issue - State: closed - Opened by sushmanthreddy over 1 year ago - 1 comment

#88 - Save predictions to original image size

Issue - State: closed - Opened by yexincheng over 1 year ago - 1 comment

#87 - pre-trained SAM and MedSAM

Issue - State: closed - Opened by AXu0511 over 1 year ago - 1 comment

#86 - Issues with sam_vit_l and sam_vit_h

Issue - State: closed - Opened by codybum over 1 year ago - 1 comment

#84 - Question about pre_CT.py

Issue - State: closed - Opened by ccccly over 1 year ago - 1 comment

#83 - Question about pre_CT.pt, test data

Issue - State: closed - Opened by peter88510 over 1 year ago - 3 comments

#82 - Multiclass segmenation using MedSAM and custom dataset

Issue - State: closed - Opened by simantika over 1 year ago - 6 comments

#81 - all step are equa to 0

Issue - State: closed - Opened by rogerslh over 1 year ago - 1 comment

#80 - Embedding stops without saving

Issue - State: closed - Opened by Rusab over 1 year ago - 2 comments

#79 - results in paper

Issue - State: closed - Opened by chengtao-lv over 1 year ago - 1 comment

#77 - Fine-Tune Custom dataset

Issue - State: closed - Opened by kime541200 over 1 year ago - 6 comments

#76 - Error for training command

Issue - State: closed - Opened by Rohinivv96 over 1 year ago - 2 comments

#75 - your inference use ground truth?

Issue - State: closed - Opened by WusterHappy over 1 year ago - 5 comments

#73 - Pre-processing MRI

Issue - State: closed - Opened by mohp1-data over 1 year ago - 4 comments

#72 - MedSAM_Inference.py error

Issue - State: closed - Opened by dongzhi128128 over 1 year ago - 6 comments

#71 - Regarding the batch_size

Issue - State: closed - Opened by Ulteraa over 1 year ago - 1 comment

#70 - Question About Multi-objects in One Image.

Issue - State: closed - Opened by peacemo over 1 year ago - 5 comments

#69 - Semantic segmentation?

Issue - State: closed - Opened by CSDAN over 1 year ago - 3 comments

#68 - How to solve data size mismatch? Thank you very much for your help.

Issue - State: closed - Opened by genggeng-123 over 1 year ago - 1 comment

#67 - those bad results what's wrong?

Issue - State: closed - Opened by jumbojing over 1 year ago

#66 - those bad results what's wrong?

Issue - State: closed - Opened by jumbojing over 1 year ago - 4 comments

#65 - Training_Loss

Issue - State: closed - Opened by Ulteraa over 1 year ago - 1 comment

#64 - Error while training

Issue - State: closed - Opened by Elsword016 over 1 year ago - 5 comments

#63 - Have you resampled the 3D volumes?

Issue - State: closed - Opened by mlszy928 over 1 year ago - 1 comment

#62 - using the network for brain MRI dataset

Issue - State: closed - Opened by Yutingxiebo over 1 year ago - 2 comments

#61 - Fine-Tune SAM with own dataset

Issue - State: closed - Opened by kime541200 over 1 year ago - 1 comment

#60 - removed a test code.

Pull Request - State: closed - Opened by FrexG over 1 year ago

#59 - image encoder

Issue - State: closed - Opened by closertt over 1 year ago - 1 comment

#58 - Train model without precomputing embeddings

Pull Request - State: closed - Opened by FrexG over 1 year ago

#57 - Using the model for a new dataset.

Issue - State: closed - Opened by genggeng-123 over 1 year ago - 1 comment

#56 - bul data

Pull Request - State: closed - Opened by FrexG over 1 year ago

#55 - Would you please share the trained model of your MedSAM?

Issue - State: closed - Opened by mlszy928 over 1 year ago - 1 comment

#54 - How to run train.py on multi GPUs?

Issue - State: closed - Opened by mlszy928 over 1 year ago - 1 comment

#53 - i do not know the difference bewteen SAM to MedSAM

Issue - State: closed - Opened by miaowahexiaohuolong over 1 year ago - 3 comments

#52 - Bug fix, missing parameter to process() function

Pull Request - State: closed - Opened by ctrlaltf2 over 1 year ago

#51 - How do you conduct the evaluation

Issue - State: closed - Opened by ukaukaaaa over 1 year ago - 1 comment

#50 - Question about image size

Issue - State: closed - Opened by yiyuexiong over 1 year ago - 3 comments

#49 - Can we do segmentation over whole 3d CT dataset without any ground truth?

Issue - State: closed - Opened by aaekay over 1 year ago - 1 comment

#48 - question about released model

Issue - State: closed - Opened by xiaocaimmm over 1 year ago - 3 comments

#47 - ValueError: operands could not be broadcast together with shapes (480,600) (256,256)

Issue - State: closed - Opened by ZhouBay-TF over 1 year ago - 5 comments

#46 - Support for csv data in data preprocessing

Pull Request - State: closed - Opened by FrexG over 1 year ago - 2 comments

#45 - Inference on New Data

Issue - State: closed - Opened by ClarkQTIM over 1 year ago - 2 comments

#44 - Unexpected key(s) in state_dict: "image_encoder.blocks.0.mlp.lin1.weight", "image_encoder.blocks.0.mlp.lin1.bias", "image_encoder.blocks.0.mlp.lin2.weight", "image_encoder.blocks.0.mlp.lin2.bias",

Issue - State: closed - Opened by miaowahexiaohuolong over 1 year ago - 1 comment

#43 - how to handle multi-class semantic segmentation of 2d images

Issue - State: closed - Opened by Kalfredwv over 1 year ago - 2 comments

#42 - About making dataset

Issue - State: closed - Opened by skyfallsss over 1 year ago - 2 comments

#41 - Provide full configuration for DRIVE vessel segmentation dataset

Issue - State: closed - Opened by ngctnnnn over 1 year ago - 3 comments

#40 - Missing branch in "pre-compute image image embedding"

Issue - State: closed - Opened by SuroshAhmadZobair over 1 year ago - 1 comment

#38 - For multiple object in a image

Issue - State: closed - Opened by Daeda1used over 1 year ago - 4 comments

#37 - Question about the data splitting

Issue - State: closed - Opened by GewelsJI over 1 year ago - 1 comment

#36 - I integrated MedSam into napari FYI

Issue - State: closed - Opened by Karol-G over 1 year ago - 2 comments
Labels: enhancement

#35 - License, MIT?

Issue - State: closed - Opened by JamesAPetts over 1 year ago - 2 comments

#34 - How to pre-process and predict unlabeled test sets？

Issue - State: closed - Opened by Gemost over 1 year ago - 2 comments

#33 - in finetune_and_inference_tutorial_2D_dataset

Issue - State: closed - Opened by vrk7 over 1 year ago - 11 comments
Labels: question

#32 - train error with Google Drive data

Issue - State: closed - Opened by MrDotOne over 1 year ago - 6 comments
Labels: enhancement

#31 - Bounding Box prompts during inference

Issue - State: closed - Opened by sheldonsebastian over 1 year ago - 1 comment

#30 - About the implementation of NpzDataset

Issue - State: closed - Opened by chenyangzhu1 over 1 year ago - 4 comments
Labels: enhancement

#29 - About NpzDataset in finetune_and_inference_tutorial_2D_dataset

Issue - State: closed - Opened by zzzyzh over 1 year ago - 1 comment

#28 - Runtime error for batch size > 1

Issue - State: closed - Opened by mostafij-rahman over 1 year ago - 10 comments

#27 - Image embeddings size

Issue - State: closed - Opened by apoorvjain56 over 1 year ago - 5 comments

#26 - Opening all files gives an error and aborts process. A possible fix

Pull Request - State: closed - Opened by chinmay5 over 1 year ago - 1 comment

#25 - Bounding box training

Issue - State: closed - Opened by NivAm12 over 1 year ago - 1 comment

#24 - The semantic labels for the training npz files

Issue - State: closed - Opened by Jazzcharles over 1 year ago - 1 comment

#23 - Multi-class segmentation?

Issue - State: closed - Opened by 2-Chae over 1 year ago - 1 comment

#22 - preprocessing error

Issue - State: closed - Opened by doctoryfx over 1 year ago - 5 comments

#21 - what is label_id

Issue - State: closed - Opened by doctoryfx over 1 year ago - 3 comments

#20 - image embeddings and bbox for prompt_encoder

Issue - State: closed - Opened by RCfun over 1 year ago - 3 comments

#19 - CPU to run inference

Issue - State: closed - Opened by mohp1-data over 1 year ago - 1 comment

#18 - correct args.device hardcoded as cuda

Pull Request - State: closed - Opened by sarrabenyahia over 1 year ago

#17 - little typing error

Pull Request - State: closed - Opened by JoseAngelGarciaSanchez over 1 year ago

#16 - Fixed bug for CPU Support, CUDA was forced

Pull Request - State: closed - Opened by JoseAngelGarciaSanchez over 1 year ago

#15 - fix forced device CUDA in MedSAM_Inference.py

Pull Request - State: closed - Opened by JoseAngelGarciaSanchez over 1 year ago

#14 - Possible Issue with CUDA Device and CPU Support in Inference Script

Issue - State: closed - Opened by JoseAngelGarciaSanchez over 1 year ago - 1 comment

#13 - feat: develop in docker

Pull Request - State: closed - Opened by linhandev over 1 year ago - 1 comment

GitHub / bowang-lab/MedSAM issues and pull requests