bowang-lab/MedSAM issues and pull requests

#317 - How to use other CT dataset to fine-tune

Issue - State: open - Opened by lihao9056 3 days ago

#316 - LiteMedSAM without prompt

Issue - State: open - Opened by Yiming0131 8 days ago - 2 comments

#315 - https://huggingface.co/spaces/junma/MedSAM2 run error

Issue - State: open - Opened by myboyliu2025 10 days ago - 1 comment

#314 - segment failure

Issue - State: open - Opened by Franktanshuai 10 days ago - 2 comments

#313 - Possible Open access for the full 1.5M dataset?

Issue - State: closed - Opened by bio-mlhui 13 days ago

#312 - LiteMedSAM的inference_2D.py能否直接使用一系列的box

Issue - State: open - Opened by chimmut 15 days ago - 1 comment

#311 - Why MedSAM2 did not use transfer learning for the same 1.5m image-mask pairs as in MedSAM1?

Issue - State: open - Opened by dzzhang96 18 days ago - 1 comment

#310 - Can MedSAM2 Perform Segmentation on 3D Medical Images with Sparse Annotations?

Issue - State: closed - Opened by Youzhuqinghuan 18 days ago - 2 comments

#309 - Inference with grid prompt

Issue - State: open - Opened by pawel-gawron 18 days ago - 1 comment

#308 - Question about the IOU loss (2)

Issue - State: open - Opened by d4nh5u 20 days ago - 1 comment

#307 - 0.1 branch.Hello, this web page connection is down

Issue - State: closed - Opened by liubaoning111 22 days ago - 1 comment

#306 - MedSAM2 for 3D volume?

Issue - State: closed - Opened by Asphyxiate-Rye 23 days ago - 2 comments

#305 - Thank you for your help!but when i run the "Fine-tune SAM on customized datasets (2D example)",The link is dead.

Issue - State: open - Opened by liubaoning111 23 days ago - 5 comments

#304 - Missing CSV file in train_no_npz.py? The dataset download page also does not have the CSV file.

Issue - State: open - Opened by if-break 26 days ago - 2 comments

#303 - Is it possible to implement non-interactive segmentation?

Issue - State: closed - Opened by 1687412531 26 days ago - 1 comment

#302 - inference

Issue - State: closed - Opened by 1687412531 26 days ago - 1 comment

#301 - SAM2

Issue - State: open - Opened by Saillxl 27 days ago - 2 comments

#300 - 一个图片中有多个实例，为什么取box的时候是只取其中一个实例包含的框，其他实例不要了吗？

Issue - State: closed - Opened by liumingzhu6060 about 1 month ago - 2 comments

#299 - MedSAM2 pretrain weight

Issue - State: open - Opened by Youzhuqinghuan about 1 month ago - 1 comment

#298 - Inference with Angiogram image

Issue - State: closed - Opened by huynhkhoa44 about 1 month ago - 2 comments

#297 - 关于多标签掩码的处理

Issue - State: closed - Opened by LReion about 1 month ago - 5 comments

#296 - About image size

Issue - State: closed - Opened by s1054020 about 1 month ago - 2 comments

#295 - MedSAM2 datasplit and inference

Issue - State: open - Opened by nairouzshehata about 1 month ago - 10 comments

#294 - 关于二维数据集的问题

Issue - State: closed - Opened by chengyansheng24 about 1 month ago - 1 comment

#293 - question about class_name

Issue - State: closed - Opened by dswahu about 1 month ago - 1 comment

#292 - about point prompt

Issue - State: closed - Opened by yyy1998-i about 1 month ago - 1 comment

#291 - question about the iou loss

Issue - State: closed - Opened by cocoshe about 1 month ago - 2 comments

#290 - dataset

Issue - State: closed - Opened by lfreee about 1 month ago - 1 comment

#289 - Hi I can't open this dataset link

Issue - State: open - Opened by QMAAA about 1 month ago - 10 comments

#288 - Is their any possibilities to add SAM2AutomaticMaskGenerator ?

Issue - State: closed - Opened by anandguptatoothlens about 2 months ago - 3 comments

#287 - Improved 2D preprocessing script

Pull Request - State: open - Opened by hamzaMahdi about 2 months ago

#286 - Why only randomly select a label as a hint in the ground truth mask?

Issue - State: closed - Opened by WanZhan-lucky 2 months ago - 1 comment

#285 - labeled areas

Issue - State: closed - Opened by lucky-asia 2 months ago - 1 comment

#284 - bbox needed for inference?

Issue - State: closed - Opened by hnyll 2 months ago - 2 comments

#283 - 2d custom dataset supported?

Issue - State: closed - Opened by hnyll 2 months ago - 1 comment

#282 - About GUI segment in WSI patches

Issue - State: closed - Opened by Leon-skops 2 months ago - 1 comment

#281 - Prompt method

Issue - State: closed - Opened by EddieEduardo 2 months ago - 1 comment

#280 - About the bounding box

Issue - State: closed - Opened by midcola 3 months ago - 3 comments

#279 - The training process of LiteMedSAM

Issue - State: closed - Opened by Yuejingkun 3 months ago - 1 comment

#277 - why image data must be normalized to [0, 1], 1]"?

Issue - State: closed - Opened by cqray1990 3 months ago - 1 comment

#276 - Fix typos

Pull Request - State: closed - Opened by Zehui-Lin 3 months ago

#275 - point prompt inference

Issue - State: closed - Opened by yyy1998-i 3 months ago - 2 comments

#274 - Is there a ViT-L and Vit-H based MedSAM which is public?

Issue - State: closed - Opened by darewolf-cyber 3 months ago - 1 comment

#273 - Finetuning MedSAM on custom dataset; Validation loss increasing!

Issue - State: closed - Opened by Amirhosein2c 3 months ago - 2 comments

#272 - Missing key(s) in state_dict:

Issue - State: closed - Opened by antoniaaaaaaaa 3 months ago

#271 - Defining bounding box with a mouse dynamically on the segmentation image

Issue - State: closed - Opened by Biopticon 3 months ago - 1 comment

#270 - Error in the bounding box arguments in teh command line

Issue - State: closed - Opened by Biopticon 3 months ago - 1 comment

#269 - Model training

Issue - State: closed - Opened by Joany-Rodrigues 4 months ago - 1 comment

#268 - mask

Issue - State: closed - Opened by lpc-97 4 months ago - 1 comment

#267 - Question about output 'segs.png' in tutorial_quickstart.ipynb file

Issue - State: closed - Opened by Lucarqi 4 months ago - 1 comment

#266 - Dateset MedSAMDemo_2D

Issue - State: closed - Opened by fengyasi 4 months ago - 1 comment

#264 - train own data with train_one_gpu.py

Issue - State: closed - Opened by XiaoChenD 4 months ago - 2 comments

#262 - Notebook for LiteMedSAM Scribble?

Issue - State: closed - Opened by GuangSunshine 4 months ago - 2 comments

#261 - Update README.md

Pull Request - State: closed - Opened by kslav 4 months ago

#260 - Evaluation for White Matter Lesions (WMLs) in MRI

Issue - State: closed - Opened by Joany-Rodrigues 4 months ago - 1 comment

#259 - data preprocess

Issue - State: closed - Opened by PANHAOC 4 months ago - 1 comment

#258 - 检测框输入，有的是正确的，有的分割的位置偏移？

Issue - State: closed - Opened by skycat88 4 months ago - 4 comments

#257 - Fine-tune question

Issue - State: closed - Opened by midcola 4 months ago - 2 comments

#256 - Incorrect Input Channel Value in Convolutional Layer with mask_in_chans

Issue - State: closed - Opened by XXN-1N 4 months ago - 2 comments

#255 - MedSAM lite can be used for other datasets too for initial weights and then do further training

Issue - State: closed - Opened by bhandaripratibha06 4 months ago - 2 comments

#254 - the speed and accuracy difference between lite model with vit model

Issue - State: closed - Opened by Cherrymelon 4 months ago - 1 comment

#252 - Integration of datasets

Issue - State: closed - Opened by PANHAOC 4 months ago - 1 comment

#251 - point prompt performance vs original SAM

Issue - State: closed - Opened by sedghi 4 months ago - 7 comments

#250 - What is the environment for generating pre-trained models in LiteMedSAM and how long does it take to train?

Issue - State: closed - Opened by RACCOOONkim 5 months ago - 3 comments

#249 - 多目标大目标包含小目标的训练数据如何处理

Issue - State: closed - Opened by skycat88 5 months ago - 3 comments

#248 - Fine-tune question

Issue - State: closed - Opened by VanLinLin 5 months ago - 2 comments

#247 - How to reproduce the validation DSC score on BraTs dataset?

Issue - State: closed - Opened by MelindaDong 5 months ago - 2 comments

#246 - About LLD-MMRI Tumor Mask

Issue - State: closed - Opened by LambdaLi 5 months ago - 1 comment

#245 - point/scribble-prompt checkpoint

Issue - State: closed - Opened by lingyunwu14 5 months ago - 6 comments

#244 - about dataset ensemble

Issue - State: closed - Opened by PANHAOC 5 months ago - 3 comments

#243 - Can I receive the file 'pretrained_checkpoint/MedSAM_vit_b_maskdecoder.pth'?

Issue - State: closed - Opened by gttae 5 months ago - 1 comment

#242 - Inference.py Issue

Issue - State: closed - Opened by ghost 5 months ago - 2 comments

#241 - How to segment 3D image?

Issue - State: closed - Opened by LIU12368 5 months ago - 2 comments

#240 - ONNX export

Issue - State: closed - Opened by sedghi 5 months ago - 1 comment

#239 - point prompts

Issue - State: closed - Opened by dannybarash7 5 months ago - 1 comment

#238 - About some gridding effect finetune on the Ultrasound dataset

Issue - State: closed - Opened by xiaoerlaigeid 5 months ago - 2 comments

#237 - Hi，I have a problem about the other dataset

Issue - State: closed - Opened by CYYJL 5 months ago - 6 comments

#236 - Is there a way to use the Sam automatic mask generator?

Issue - State: closed - Opened by Lorenzuou 5 months ago - 2 comments

#235 - 我要是想跑整个测试集的话，他的测试脚本要怎么写啊，对不起我是一个新手

Issue - State: closed - Opened by xxd2977 6 months ago - 1 comment

#234 - Does not work for 2D images

Issue - State: closed - Opened by SoberSalman 6 months ago - 1 comment

#233 - There is a problem in the code

Issue - State: closed - Opened by tqinger 6 months ago - 3 comments

#232 - No validation and testing part of the project?

Issue - State: closed - Opened by xxd2977 6 months ago - 1 comment

#231 - Remove '-prefix' for pre_CT_MR.py in README

Pull Request - State: closed - Opened by oikosohn 6 months ago

#230 - The data set used for each part

Issue - State: closed - Opened by MyFirst905 6 months ago - 4 comments

#228 - RuntimeError: Error(s) in loading state_dict for MedSAM_Lite

Issue - State: closed - Opened by qqc22111 6 months ago - 2 comments

#227 - MedSAMLite1 sample data : brain segmentation quality issue

Issue - State: closed - Opened by ALdevonia 6 months ago - 4 comments

#226 - How to export the decoder of MedSAM as ONNX file?

Issue - State: closed - Opened by iamskab001 6 months ago - 1 comment

#225 - Code for loading the whole training dataset

Issue - State: closed - Opened by Jefferyy-Peng 6 months ago - 1 comment

#224 - During inference model is not getting recognised in sam_model_registry

Issue - State: closed - Opened by bhandaripratibha06 6 months ago - 2 comments

#222 - Weights for 256x256

Issue - State: closed - Opened by ariharasudhanm 6 months ago - 1 comment

#221 - Issue with docker save

Issue - State: closed - Opened by rajpiyush18 6 months ago - 1 comment

GitHub / bowang-lab/MedSAM issues and pull requests