Ecosyste.ms: Issues

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GitHub / bow/crimson issues and pull requests

#78 - chore(deps-dev): Bump safety from 3.2.7 to 3.2.11

Pull Request - State: open - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#77 - chore: Bump mikepenz/action-junit-report from 4 to 5

Pull Request - State: open - Opened by dependabot[bot] 3 months ago - 1 comment

#76 - chore(deps-dev): Bump safety from 3.2.7 to 3.2.10

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies

#75 - chore(deps-dev): Bump mypy from 1.11.2 to 1.13.0

Pull Request - State: open - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#74 - chore(deps-dev): Bump mypy from 1.11.2 to 1.12.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies

#73 - chore(deps-dev): Bump black from 24.8.0 to 24.10.0

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#72 - chore(deps-dev): Bump bandit from 1.7.9 to 1.7.10

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#71 - chore(deps-dev): Bump safety from 3.2.7 to 3.2.8

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#70 - chore(deps-dev): Bump types-pyyaml from 6.0.12.20240808 to 6.0.12.20240917

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#69 - chore: Bump paambaati/codeclimate-action from 8.0.0 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 2 comments

#68 - chore(deps-dev): Bump mypy from 1.11.1 to 1.11.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#67 - chore(deps-dev): Bump safety from 3.2.5 to 3.2.6

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#66 - chore(deps): Bump pyyaml from 6.0.1 to 6.0.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: dependencies

#65 - chore(deps-dev): Bump flake8 from 7.1.0 to 7.1.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#64 - chore(deps-dev): Bump types-pyyaml from 6.0.12.20240724 to 6.0.12.20240808

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#63 - chore(deps-dev): Bump safety from 3.2.4 to 3.2.5

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#62 - chore(deps-dev): Bump black from 24.4.2 to 24.8.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#61 - chore(deps-dev): Bump mypy from 1.11.0 to 1.11.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#60 - chore(deps-dev): Bump safety from 3.0.1 to 3.2.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 2 comments
Labels: dependencies

#59 - chore(deps-dev): Bump platformdirs from 3.11.0 to 4.2.2

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 5 comments
Labels: dependencies

#58 - chore(deps-dev): Bump safety from 3.0.1 to 3.2.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#57 - chore(deps-dev): Bump black from 24.2.0 to 24.4.2

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 2 comments
Labels: dependencies

#56 - chore(deps-dev): Bump platformdirs from 3.11.0 to 4.2.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#55 - chore: Bump paambaati/codeclimate-action from 5.0.0 to 6.0.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 3 comments

#54 - chore(deps-dev): Bump black from 24.2.0 to 24.4.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#53 - chore(deps-dev): Bump safety from 3.0.1 to 3.1.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#52 - chore(deps-dev): Bump pytest-cov from 4.1.0 to 5.0.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 2 comments
Labels: dependencies

#51 - chore(deps-dev): Bump black from 24.2.0 to 24.3.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies

#50 - chore(deps-dev): Bump types-pyyaml from 6.0.12.12 to 6.0.12.20240311

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 2 comments
Labels: dependencies

#49 - chore(deps-dev): Bump pytest from 8.0.2 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies

#48 - chore(deps-dev): Bump bandit from 1.7.7 to 1.7.8

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies

#47 - chore(deps-dev): Bump mypy from 1.8.0 to 1.9.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies

#46 - chore(deps-dev): Bump pytest from 8.0.1 to 8.0.2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies

#45 - chore(deps-dev): Bump black from 24.1.1 to 24.2.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#44 - chore(deps-dev): Bump pytest from 8.0.0 to 8.0.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#43 - chore(deps-dev): Bump twine from 4.0.2 to 5.0.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#42 - chore(deps-dev): Bump safety from 2.4.0b2 to 3.0.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#41 - chore(deps-dev): Bump pytest-sugar from 0.9.7 to 1.0.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#40 - chore(deps-dev): Bump platformdirs from 3.11.0 to 4.2.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#39 - chore(deps-dev): Bump black from 24.1.0 to 24.1.1

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#38 - chore(deps-dev): Bump pytest from 7.4.4 to 8.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#37 - chore(deps-dev): Bump bandit from 1.7.6 to 1.7.7

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#36 - chore(deps-dev): Bump black from 23.12.1 to 24.1.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#35 - chore: Bump actions/cache from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment

#34 - chore(deps-dev): Bump safety from 3.0.0a1 to 3.0.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#33 - chore(deps-dev): Bump safety from 2.4.0b2 to 3.0.0a1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#32 - chore(deps-dev): Bump pytest from 7.4.3 to 7.4.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#31 - chore(deps-dev): Bump flake8 from 6.1.0 to 7.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#30 - chore(deps-dev): Bump mypy from 1.7.1 to 1.8.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#29 - chore(deps-dev): Bump black from 23.12.0 to 23.12.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#28 - chore(deps-dev): Bump black from 23.11.0 to 23.12.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#27 - chore(deps-dev): Bump bandit from 1.7.5 to 1.7.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#26 - chore: Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment

#25 - chore(deps-dev): Bump mypy from 1.7.0 to 1.7.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#24 - chore(deps-dev): Bump safety from 2.4.0b1 to 2.4.0b2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment

#23 - chore: Bump actions/setup-python from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment

#22 - chore: Bump paambaati/codeclimate-action from 3.2.0 to 5.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment

#21 - chore: Bump docker/login-action from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment

#20 - chore: Bump docker/build-push-action from 3 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment

#19 - New release is needed to fix PyYAML 5 breaking

Issue - State: closed - Opened by slazicoicr over 1 year ago - 1 comment

#18 - Add support for output from STAR-fusion 1.10

Pull Request - State: closed - Opened by Redmar-van-den-Berg almost 3 years ago - 4 comments

#17 - Click dependency on click<8.0 and >=7.0 is a problem

Issue - State: closed - Opened by myourshaw almost 3 years ago - 1 comment

#16 - Add support for empty vep output

Pull Request - State: closed - Opened by Redmar-van-den-Berg over 3 years ago - 2 comments

#15 - Reading a picard file created on linux fails on Windows OS

Issue - State: closed - Opened by myourshaw over 3 years ago - 3 comments

#14 - Add support for vep output with empty entries

Pull Request - State: closed - Opened by Redmar-van-den-Berg over 4 years ago - 3 comments

#13 - Crimson crashes on vep stats with no data

Issue - State: closed - Opened by Redmar-van-den-Berg over 4 years ago - 1 comment

#12 - Add support for special headers in empty fusioncatcher output

Pull Request - State: closed - Opened by Redmar-van-den-Berg over 4 years ago - 1 comment

#11 - fusioncatcher has different headers when there are no results

Issue - State: closed - Opened by Redmar-van-den-Berg over 4 years ago - 1 comment

#10 - Make requirements.txt more permissive

Issue - State: closed - Opened by slazicoicr almost 5 years ago - 1 comment

#9 - Issue 8

Pull Request - State: closed - Opened by Redmar-van-den-Berg about 5 years ago - 3 comments

#8 - Add support for star-fusion 1.7.0

Issue - State: closed - Opened by Redmar-van-den-Berg over 5 years ago - 4 comments

#7 - Issue 6

Pull Request - State: closed - Opened by Redmar-van-den-Berg over 5 years ago - 5 comments

#6 - Add support for fusioncatcher 1.00

Issue - State: closed - Opened by Redmar-van-den-Berg over 5 years ago - 1 comment

#5 - New release?

Issue - State: closed - Opened by johanneskoester over 6 years ago - 1 comment

#4 - verifybamid

Pull Request - State: closed - Opened by ernfrid over 6 years ago - 1 comment

#3 - handle samtools typo fix

Pull Request - State: closed - Opened by ernfrid over 7 years ago - 2 comments

#2 - Fastqc without to extract zip file

Issue - State: closed - Opened by mictadlo about 8 years ago - 3 comments

#1 - Initial Update

Issue - State: closed - Opened by pyup-bot over 8 years ago