Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / bodkan/admixr issues and pull requests
#91 - Add a function for writing (filtered/modified) EIGENSTRAT data to a new location
Issue -
State: open - Opened by bodkan 5 months ago
- 1 comment
#90 - Error in F3: Following samples are not present
Issue -
State: closed - Opened by ans6160 over 1 year ago
- 2 comments
#89 - admixr does not find qpDstat
Issue -
State: closed - Opened by nicolo-tellini over 1 year ago
- 3 comments
#88 - "inbreed:NO means base population must have hets!"
Issue -
State: closed - Opened by Agenetics about 2 years ago
- 8 comments
#87 - Silence new readr warnings/messages
Issue -
State: closed - Opened by bodkan about 3 years ago
- 1 comment
#86 - There seems to have a limit for how many combinations of f4 can be computed at once
Issue -
State: closed - Opened by dangliu about 3 years ago
- 5 comments
#85 - Move from Travis to Github Actions
Issue -
State: closed - Opened by bodkan about 3 years ago
- 1 comment
#84 - Error: Not all three ind/snp/geno files present
Issue -
State: closed - Opened by kawu001 about 3 years ago
- 6 comments
#83 - custom jackknife
Issue -
State: closed - Opened by nicolo-tellini about 3 years ago
- 4 comments
#82 - pop: has sample size 1 and inbreed set
Issue -
State: closed - Opened by sahwa over 3 years ago
- 1 comment
#81 - filter the geno file for transitions
Issue -
State: closed - Opened by mariels over 3 years ago
- 3 comments
#80 - f4 stats all zero. Rank 0!. Aborting run
Issue -
State: closed - Opened by sahwa over 3 years ago
- 4 comments
#79 - Check whitespace handling in EIGENSTRAT paths
Issue -
State: closed - Opened by bodkan over 3 years ago
- 1 comment
#78 - bad chrom: conting111,The number of genome conting more than 1000?
Issue -
State: closed - Opened by biofang almost 4 years ago
- 1 comment
#77 - qpAdm_rotation problem when nsources >= 3
Issue -
State: closed - Opened by paikusuma almost 4 years ago
- 3 comments
#76 - Outgroup f3
Issue -
State: closed - Opened by murielgb almost 4 years ago
- 7 comments
#75 - Describe optional parameter specification in more detail
Issue -
State: closed - Opened by bodkan about 4 years ago
#74 - AABB/BBAA sites
Issue -
State: closed - Opened by qhelleu about 4 years ago
- 1 comment
#73 - admixR and non-standard Chromosome names
Issue -
State: closed - Opened by Marvin02860 about 4 years ago
- 5 comments
#72 - issue with filter_bed: Inconsistent naming convention
Issue -
State: closed - Opened by mgb1985 about 4 years ago
- 8 comments
#71 - How does admixr calculate stats for populations (multiple individuals belonging to same group)?
Issue -
State: closed - Opened by cjy8709 about 4 years ago
- 1 comment
#70 - Take `$excluded` into account when running `count_snps()` on the geno file
Issue -
State: closed - Opened by bodkan about 4 years ago
#69 - d() crashes with segmentation fault
Issue -
State: closed - Opened by th-al about 4 years ago
- 2 comments
#68 - Address the "runnable examples" CRAN issue
Pull Request -
State: closed - Opened by bodkan over 4 years ago
#67 - CRAN re-submission - add examples, handle printing output properly
Pull Request -
State: closed - Opened by bodkan over 4 years ago
#66 - ROLLOFF
Issue -
State: closed - Opened by foala over 4 years ago
- 1 comment
#65 - Make ADMIXTOOLS $PATH checking more robust on different platforms
Pull Request -
State: closed - Opened by bodkan over 4 years ago
#64 - Fix strange error during CRAN submission
Issue -
State: closed - Opened by bodkan over 4 years ago
- 4 comments
#63 - Add prototype of qpAdm rotation strategy
Pull Request -
State: closed - Opened by bodkan over 4 years ago
#62 - Note on the pre-screening functionality
Issue -
State: closed - Opened by bodkan over 4 years ago
#61 - Check for correct identity of the "data" argument in all wrappers
Issue -
State: closed - Opened by bodkan over 4 years ago
- 2 comments
#60 - Fix broken handling of single-source qpAdm runs (fixes #51)
Pull Request -
State: closed - Opened by bodkan over 4 years ago
#59 - Check truncated output
Pull Request -
State: closed - Opened by bodkan over 4 years ago
#58 - Implementation of examining log output information
Pull Request -
State: closed - Opened by bodkan over 4 years ago
#57 - Fix a (potential) issue with log paths on Windows?
Issue -
State: open - Opened by bodkan over 4 years ago
- 13 comments
#56 - "d" or "f4" statistics output always stderr = 1
Issue -
State: closed - Opened by DanielRamos12 over 4 years ago
- 2 comments
#55 - An error returning empty dataframe
Issue -
State: closed - Opened by aromaze85 over 4 years ago
- 2 comments
#54 - Add exhaustive exploration of qpAdm models
Issue -
State: closed - Opened by bodkan over 4 years ago
- 2 comments
#53 - Use a data.table backend?
Issue -
State: closed - Opened by bodkan over 4 years ago
- 1 comment
#52 - Deal with ADMIXTOOLS crashes properly
Issue -
State: closed - Opened by bodkan over 4 years ago
- 6 comments
#51 - Problems with only one source in qpAdm
Issue -
State: closed - Opened by bodkan over 4 years ago
#50 - Passing Params to PAR File
Issue -
State: closed - Opened by testeranon almost 5 years ago
- 3 comments
#49 - admixr result
Issue -
State: closed - Opened by smallfishcui almost 5 years ago
- 3 comments
#48 - Another duplicated populations error
Issue -
State: closed - Opened by bodkan almost 5 years ago
#47 - Deal with truncated log files properly
Issue -
State: closed - Opened by bodkan almost 5 years ago
#46 - Differentiating between the two admixr packages
Issue -
State: closed - Opened by s-usr about 5 years ago
- 1 comment
#45 - f3 has no results from my data
Issue -
State: closed - Opened by yimingweng over 5 years ago
- 1 comment
#44 - Look into the f3 problems when same population is used twice
Issue -
State: closed - Opened by bodkan over 5 years ago
#43 - Implement some of the useful "convertf" functionality
Issue -
State: closed - Opened by bodkan over 5 years ago
#42 - Convert 9 <-> NA in read_geno/write_geno
Issue -
State: closed - Opened by bodkan almost 6 years ago
- 1 comment
#41 - Fast printing of EIGENSTRAT objects
Pull Request -
State: closed - Opened by bodkan almost 6 years ago
- 1 comment
#40 - Fix parsing errors for duplicated populations
Pull Request -
State: closed - Opened by bodkan almost 6 years ago
#39 - Remove C++ dependencies
Pull Request -
State: closed - Opened by bodkan almost 6 years ago
#38 - C++ implementation of VCF -> EIGENSTRAT conversion
Pull Request -
State: closed - Opened by bodkan almost 6 years ago
#37 - Full implementation of qpWave and qpAdm
Pull Request -
State: closed - Opened by bodkan almost 6 years ago
#36 - Change SNP counting, EIGENSTRAT construction and printing
Pull Request -
State: closed - Opened by bodkan almost 6 years ago
#35 - Check log file before parsing in case ADMIXTOOLS crashes
Issue -
State: closed - Opened by bodkan almost 6 years ago
- 2 comments
#34 - Add a faster VCF --> EIGENSTRAT parser
Issue -
State: closed - Opened by bodkan about 6 years ago
- 1 comment
#33 - Add description of adding ADMIXTOOLS to $PATH
Issue -
State: closed - Opened by bodkan about 6 years ago
#32 - Add possibility to calculate f3 for all combinations
Issue -
State: closed - Opened by bodkan about 6 years ago
#31 - Specify new population labels directly, not via list
Pull Request -
State: closed - Opened by bodkan about 6 years ago
#30 - Re-write the package to make it more %>% friendly
Pull Request -
State: closed - Opened by bodkan about 6 years ago
#29 - Find a way to specify the paths to ADMIXTOOLS binaries
Issue -
State: closed - Opened by bodkan about 6 years ago
- 1 comment
#28 - Figure out a way to automatically build package website during Travis CI builds
Issue -
State: closed - Opened by bodkan about 6 years ago
#27 - Add R wrapper around `mergeit`
Issue -
State: closed - Opened by bodkan about 6 years ago
- 1 comment
#26 - Organize exported functions in the reference list
Issue -
State: closed - Opened by bodkan about 6 years ago
#25 - Make subset_sites function more generic
Issue -
State: closed - Opened by bodkan about 6 years ago
- 1 comment
#24 - Make sure that temporary files are properly cleaned up
Issue -
State: closed - Opened by bodkan about 6 years ago
- 1 comment
#23 - Use `use_pipe`?
Issue -
State: closed - Opened by bodkan about 6 years ago
#22 - Make function names more readable
Issue -
State: closed - Opened by bodkan over 6 years ago
#21 - Implement better file path handling
Issue -
State: closed - Opened by bodkan over 6 years ago
#20 - Deal with the "best" entry in a D statistics output
Issue -
State: closed - Opened by bodkan over 6 years ago
- 1 comment
#19 - Check for ADMIXTOOLS presence
Issue -
State: closed - Opened by bodkan over 6 years ago
#18 - Can we use "SSS" and "DIR" options?
Issue -
State: closed - Opened by bodkan over 6 years ago
#17 - Install ADMIXTOOLS into a Travis CI environment for future testing
Issue -
State: closed - Opened by bodkan over 6 years ago
- 1 comment
#16 - Add an option to save ADMIXTOOLS config/par files with sensible names
Issue -
State: closed - Opened by bodkan over 6 years ago
- 2 comments
#15 - Let qpDstat calculate the standard errors
Issue -
State: closed - Opened by bodkan over 6 years ago
- 1 comment
#14 - Use data.table instead of dplyr
Issue -
State: closed - Opened by bodkan almost 7 years ago
- 1 comment
#13 - Prevent unnecessary warning/message info in read_geno/read_ind/read_snp
Issue -
State: closed - Opened by bodkan almost 7 years ago
- 1 comment
#12 - Add a vignette describing "the old way" vs "the new way" for running ADMIXTOOLS analysis
Issue -
State: closed - Opened by bodkan almost 7 years ago
#11 - Add a tiny utility function for loading and writing EIGENSTRAT data in data.frames
Issue -
State: closed - Opened by bodkan almost 7 years ago
- 1 comment
#10 - Export VCF from EIGENSTRAT
Issue -
State: closed - Opened by bodkan about 7 years ago
- 1 comment
#9 - Fix issues with functions from external libraries not being available
Issue -
State: closed - Opened by bodkan about 7 years ago
- 1 comment
#8 - Add support for the "poplistname" option in qpDstat
Issue -
State: closed - Opened by bodkan about 7 years ago
- 1 comment
#7 - Check for a presence of individuals in an "ind" file
Issue -
State: closed - Opened by bodkan about 7 years ago
#6 - Import from VCF into EIGENSTRAT
Issue -
State: closed - Opened by bodkan about 7 years ago
- 3 comments
#5 - Convert ADMIXTOOLS warnings to R warnings
Issue -
State: closed - Opened by bodkan about 7 years ago
- 2 comments
#4 - Convenient function for generating badsnp_file
Issue -
State: closed - Opened by bodkan about 7 years ago
- 1 comment
#3 - A single function to read all output
Issue -
State: closed - Opened by bodkan about 7 years ago
#2 - Add a proper README
Issue -
State: closed - Opened by bodkan about 7 years ago
#1 - Add tests for the wrapper functionality
Issue -
State: closed - Opened by bodkan about 7 years ago