Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bodenmillergroup/imcpluginscp issues and pull requests

#53 - Maintenance

Issue - State: closed - Opened by jwindhager almost 2 years ago - 1 comment

#52 - IMC - CorrectSpilloverApply

Issue - State: closed - Opened by jsymington over 2 years ago - 2 comments

#50 - Implementing measurement selection for MeasureObjectIntensityMultichannel

Pull Request - State: open - Opened by votti almost 4 years ago - 3 comments

#49 - Regular CI test and badge

Pull Request - State: closed - Opened by nilseling almost 4 years ago - 4 comments

#48 - Fixes wrong suffix appending for compensated measurements

Pull Request - State: closed - Opened by votti almost 4 years ago

#47 - Add Image level metadata variable table in exportvarcsv

Pull Request - State: closed - Opened by votti almost 4 years ago

#46 - Develop cp2

Pull Request - State: closed - Opened by votti about 4 years ago

#45 - A module to export measurement variable metadata.

Pull Request - State: closed - Opened by votti about 4 years ago

#44 - Add CI via github actions

Pull Request - State: closed - Opened by votti about 4 years ago

#43 - Fix docstring bug

Pull Request - State: closed - Opened by votti about 4 years ago

#42 - Update README

Pull Request - State: closed - Opened by votti about 4 years ago

#41 - Update Modules to CP4

Pull Request - State: closed - Opened by votti about 4 years ago

#40 - usage on CellProfiler 4

Issue - State: closed - Opened by SBata about 4 years ago - 8 comments

#39 - Could not run pipeline

Issue - State: closed - Opened by KaWingLee9 about 4 years ago - 1 comment

#38 - Make crop parametric

Pull Request - State: closed - Opened by votti over 4 years ago - 1 comment

#37 - Stackimages crashes when trying to raise shape missmatch error

Issue - State: closed - Opened by votti almost 5 years ago

#36 - Rename plugin names to not include whitespaces

Issue - State: closed - Opened by jwindhager about 5 years ago - 4 comments
Labels: enhancement

#35 - Feature objectcrops cp3

Pull Request - State: closed - Opened by votti over 5 years ago

#34 - A module to allow clipping the image range

Pull Request - State: closed - Opened by votti over 5 years ago

#33 - Adds the scipy median filter

Pull Request - State: closed - Opened by votti over 5 years ago

#32 - CP3: Summarize Stack: visualization gives error

Issue - State: closed - Opened by votti over 5 years ago - 1 comment
Labels: bug, wontfix

#31 - Mask2binstack: stacks not accurately scaled

Issue - State: closed - Opened by votti over 5 years ago
Labels: bug

#30 - Feature savecrops cp3

Pull Request - State: closed - Opened by votti almost 6 years ago - 1 comment

#29 - StackImages module

Pull Request - State: closed - Opened by votti almost 6 years ago

#28 - Add stack images module

Issue - State: closed - Opened by votti almost 6 years ago - 1 comment
Labels: enhancement

#27 - Correct spillover matrix or TIFF image used for CP3 spillover correction

Issue - State: closed - Opened by arcolombo almost 6 years ago - 1 comment

#26 - [WIP] Fixes compensation with na measurements

Pull Request - State: closed - Opened by votti almost 6 years ago

#26 - [WIP] Fixes compensation with na measurements

Pull Request - State: closed - Opened by votti almost 6 years ago

#24 - Merge develop-cp3 into master

Pull Request - State: closed - Opened by votti about 6 years ago

#22 - [WIP] Adapts save_object_crops for cp3

Pull Request - State: closed - Opened by votti over 6 years ago

#21 - "Removeoulier" enable scaling to bitdepth

Pull Request - State: closed - Opened by votti over 6 years ago - 2 comments

#20 - CP2: `CorrectSpilloverMeasurements` does not work in Windows

Issue - State: closed - Opened by votti over 6 years ago - 2 comments
Labels: bug

#19 - MeasureObjectIntensityMultichannel and MeasureImageIntensityMultichannel have different indexing

Issue - State: closed - Opened by votti over 6 years ago - 4 comments
Labels: bug

#17 - Rescale Objects: Upscale option not correctly implemented

Issue - State: closed - Opened by votti over 6 years ago - 1 comment
Labels: bug, wontfix

#16 - CP3: deprecate rescaleobjects

Issue - State: closed - Opened by votti over 6 years ago - 1 comment

#15 - make random crop seed parametric

Issue - State: closed - Opened by smaffiol over 6 years ago
Labels: enhancement

#14 - MeasureObjectIntensity Multichannel - Error: too many indices for array

Issue - State: closed - Opened by hartlandj over 6 years ago - 4 comments

#13 - Correct documentation for 'crop bb'

Issue - State: closed - Opened by votti about 7 years ago
Labels: enhancement

#12 - Feature compensation

Pull Request - State: closed - Opened by votti about 7 years ago

#11 - Renumber Objects After Rescale Objects

Issue - State: closed - Opened by ndamond over 7 years ago - 1 comment

#10 - Feature remove dependencies

Pull Request - State: closed - Opened by votti over 7 years ago

#9 - Remove dependencies

Issue - State: closed - Opened by votti over 7 years ago - 2 comments

#8 - Write documentation

Issue - State: closed - Opened by votti over 7 years ago - 1 comment

#7 - Add option to save ilastik compatible tiffs with saveimage

Issue - State: closed - Opened by mleutenegger over 7 years ago - 1 comment

#6 - Implement remove outlier filter

Issue - State: closed - Opened by mleutenegger over 7 years ago - 1 comment

#5 - Additional CP modules for the IMC pipeline

Pull Request - State: closed - Opened by votti over 7 years ago - 2 comments
Labels: enhancement, help wanted

#4 - Add compensation module

Issue - State: closed - Opened by votti over 7 years ago - 4 comments
Labels: enhancement

#3 - Add mask to binary module

Issue - State: closed - Opened by votti over 7 years ago - 1 comment
Labels: enhancement

#2 - Add crop objects module

Issue - State: closed - Opened by votti over 7 years ago - 1 comment
Labels: enhancement

#1 - Add Distance transform module

Issue - State: closed - Opened by votti over 7 years ago - 1 comment
Labels: enhancement