bobeobibo/phigaro issues and pull requests

#46 - issues about output Files

Issue - State: closed - Opened by qianxin-kxy about 1 year ago - 1 comment

#45 - issues on output files

Issue - State: closed - Opened by qianxin-kxy about 1 year ago

#44 - Can the location where the intermediate file is generated be changed to be inside the output file?

Issue - State: closed - Opened by Dx-wmc about 1 year ago - 3 comments

#43 - What is the latest version of phigaro ?

Issue - State: closed - Opened by duboism over 1 year ago - 1 comment

#42 - Don't store program and data location in config files

Issue - State: open - Opened by duboism over 1 year ago - 2 comments

#41 - glibc incompatible

Issue - State: closed - Opened by GracaP88 over 1 year ago - 3 comments

#40 - Could not download database of phigaro

Issue - State: closed - Opened by quliping almost 2 years ago - 4 comments

#39 - Wrong paths are used when installing figaro via conda

Issue - State: closed - Opened by kabilov almost 2 years ago - 1 comment

#38 - Html result file error

Issue - State: closed - Opened by liuxiong714 about 2 years ago - 1 comment

#37 - Update environment.yml

Pull Request - State: closed - Opened by alvlako about 2 years ago

#36 - Short Sequences

Issue - State: closed - Opened by antixz1 over 2 years ago - 1 comment

#35 - Output coordinates are off by 1

Issue - State: closed - Opened by snystrom over 2 years ago - 2 comments

#34 - db download :: download.ripcm.com/phigaro/ broken

Issue - State: closed - Opened by EricDeveaud almost 3 years ago - 6 comments

#33 - TypeError: object.new(BlockManager) is not safe, use BlockManager.new()

Issue - State: open - Opened by jdwinkler-lanzatech almost 3 years ago - 17 comments

#32 - Calculation of the number of intact and defective prophages

Issue - State: closed - Opened by abhinavyesss about 3 years ago - 1 comment

#31 - Can't understand the option "-d: Exclude sequences with length < 20000 automatically".

Issue - State: closed - Opened by ChenTianYi99 over 3 years ago - 2 comments

#30 - Empty output file in some genomes

Issue - State: closed - Opened by Daikuang over 3 years ago - 4 comments

#29 - phigaro-setup - non-interactive setup possible?

Issue - State: closed - Opened by rpetit3 over 3 years ago - 5 comments

#28 - pvog database link not working

Issue - State: closed - Opened by Handymanalan over 3 years ago - 2 comments

#27 - Unable to run `sudo phigaro-setup`

Issue - State: closed - Opened by gabriellovate over 3 years ago - 4 comments

#26 - Modes Description

Issue - State: closed - Opened by SionBayliss almost 4 years ago - 1 comment

#25 - Are there plans to submit Phigaro to Bioconda?

Issue - State: closed - Opened by rpetit3 almost 4 years ago - 6 comments

#24 - Include phigaro in What the Phage (WtP)?

Issue - State: closed - Opened by chris-rands almost 4 years ago - 2 comments

#23 - KeyError: 'mean_gc'

Issue - State: closed - Opened by snayfach almost 4 years ago - 1 comment

#22 - Config file error

Issue - State: closed - Opened by snayfach almost 4 years ago - 1 comment

#21 - Error with a big multifasta file

Issue - State: closed - Opened by luayou almost 4 years ago - 2 comments

#20 - output directory name generation :: breaks when local dir used

Issue - State: closed - Opened by EricDeveaud over 4 years ago - 6 comments

#19 - Add relevant badges

Pull Request - State: closed - Opened by chris-rands over 4 years ago

#18 - How are transposable elements determined?

Issue - State: closed - Opened by snayfach over 4 years ago - 1 comment

#17 - Code style via `black`

Pull Request - State: closed - Opened by chris-rands over 4 years ago

#16 - Using phigaro via conda

Issue - State: closed - Opened by chris-rands over 4 years ago - 1 comment

#15 - Fix output path when not in the form -o dir/file

Pull Request - State: closed - Opened by chris-rands over 4 years ago

#14 - Remove Error for sequences < 20000 bp

Issue - State: closed - Opened by vinisalazar over 4 years ago - 1 comment

#13 - use command instead of locate

Issue - State: open - Opened by EricDeveaud over 4 years ago - 4 comments

#12 - Can the GC score calculation be improved?

Issue - State: closed - Opened by chris-rands over 4 years ago - 2 comments

#11 - please tag a release

Issue - State: closed - Opened by EricDeveaud over 4 years ago - 3 comments

#10 - Input prodigal GFF/output prophage call in GFF format?

Issue - State: closed - Opened by jdwinkler-lanzatech almost 5 years ago - 8 comments

#9 - fix pyYAML requirement; suggest no sudo

Pull Request - State: closed - Opened by chris-rands almost 5 years ago

#8 - 'Readme.md' couldn't be found during installation

Issue - State: closed - Opened by LSTUGA almost 5 years ago - 1 comment

#7 - Ensure Readme.md is correct name

Pull Request - State: closed - Opened by chris-rands about 5 years ago - 1 comment