Ecosyste.ms: Issues

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GitHub / bluenote-1577/skani issues and pull requests

#35 - Thomas wang's hash function

Issue - State: closed - Opened by jianshu93 2 months ago - 1 comment

#34 - needletail buffer-redux

Issue - State: open - Opened by jianshu93 3 months ago - 2 comments

#33 - Do not use full header in the output

Issue - State: open - Opened by apcamargo 3 months ago - 1 comment

#32 - `--full-matrix` doesn't work with `--sparse`

Issue - State: closed - Opened by apcamargo 3 months ago - 4 comments

#31 - Fix output format in triangle mode

Pull Request - State: closed - Opened by fplazaonate 3 months ago - 6 comments

#30 - calculate ANI for eukaryotes such as fungi

Issue - State: closed - Opened by neptuneyt 5 months ago - 2 comments

#29 - (Feature Request) Host the GTDB r214.1 skani database

Issue - State: closed - Opened by jolespin 6 months ago - 6 comments

#27 - question on FracMinHash comparison with Minimzer+MinHash

Issue - State: closed - Opened by jianshu93 7 months ago - 1 comment

#26 - Question: How does skani handle ambiguous ("N") bases?

Issue - State: closed - Opened by nrminor 8 months ago - 3 comments

#25 - skani outputting low number of comparisons

Issue - State: closed - Opened by Valentin-Bio 9 months ago - 2 comments

#24 - Question on Markers.bin file.

Issue - State: closed - Opened by Mohamed-Elmanzalawi 9 months ago - 1 comment

#23 - [Question] Other uses of k-mer sketches created by skani?

Issue - State: closed - Opened by jolespin 10 months ago - 5 comments

#22 - [Feature request] Many-to-many ANI comparisons

Issue - State: closed - Opened by jolespin 10 months ago - 6 comments

#21 - Rescue_small question and potential bug

Issue - State: open - Opened by AroneyS 10 months ago - 2 comments

#20 - Implementation of Thomas Wang's integer hash function

Issue - State: closed - Opened by donovan-h-parks 12 months ago - 4 comments

#19 - skani as library restricted to 1 thread

Issue - State: closed - Opened by AroneyS 12 months ago - 2 comments

#18 - How to make a Heatmap with skani matrix output

Issue - State: closed - Opened by Justan6 12 months ago - 4 comments

#17 - Incorrect version number reported

Issue - State: closed - Opened by donovan-h-parks about 1 year ago - 1 comment

#16 - ANI values not symmetric?

Issue - State: closed - Opened by donovan-h-parks about 1 year ago - 5 comments

#15 - skani versus bindash

Issue - State: closed - Opened by jianshu93 over 1 year ago - 5 comments

#14 - Aligned fraction reported by triangle mode

Issue - State: closed - Opened by donovan-h-parks over 1 year ago - 4 comments

#13 - Skani accuracy blow 85% ANI

Issue - State: closed - Opened by jianshu93 over 1 year ago - 1 comment

#12 - help info for use as a library

Issue - State: open - Opened by jianshu93 over 1 year ago - 6 comments

#11 - Make `clap` an optional dependency

Pull Request - State: closed - Opened by althonos over 1 year ago - 6 comments

#10 - Regression

Pull Request - State: closed - Opened by bluenote-1577 over 1 year ago

#9 - readme up

Pull Request - State: closed - Opened by bluenote-1577 over 1 year ago

#8 - merge from main

Pull Request - State: closed - Opened by bluenote-1577 over 1 year ago

#7 - Identical sequences have pairwise AF lower than 100%

Issue - State: closed - Opened by apcamargo over 1 year ago - 4 comments
Labels: enhancement

#6 - ARM64 support for skani by default

Issue - State: closed - Opened by bluenote-1577 over 1 year ago - 2 comments
Labels: enhancement

#5 - skani for eukaryotic genomes

Issue - State: closed - Opened by jianshu93 over 1 year ago - 7 comments
Labels: question

#4 - Update to main commit

Pull Request - State: closed - Opened by bluenote-1577 over 1 year ago

#3 - Questions on AAI verus skaai?

Issue - State: closed - Opened by jianshu93 over 1 year ago - 6 comments
Labels: question

#2 - support for arm64 neon

Issue - State: closed - Opened by jianshu93 over 1 year ago - 6 comments
Labels: enhancement

#1 - Create LICENSE

Pull Request - State: closed - Opened by bluenote-1577 almost 2 years ago