blahah/transrate-paper issues and pull requests

#21 - implement expression-balanced contig score in transrate

Issue - State: open - Opened by blahah about 9 years ago

#21 - implement expression-balanced contig score in transrate

Issue - State: open - Opened by blahah about 9 years ago

#20 - cite bamtools and bioruby in implementation details

Issue - State: closed - Opened by blahah over 9 years ago

#20 - cite bamtools and bioruby in implementation details

Issue - State: closed - Opened by blahah over 9 years ago

#19 - many fixes

Pull Request - State: closed - Opened by cboursnell almost 10 years ago

#19 - many fixes

Pull Request - State: closed - Opened by cboursnell almost 10 years ago

#18 - format for genome biology

Issue - State: closed - Opened by blahah about 10 years ago

#18 - format for genome biology

Issue - State: closed - Opened by blahah about 10 years ago

#17 - random perturbation experiments

Issue - State: closed - Opened by blahah about 10 years ago - 1 comment
Labels: figure, analysis

#17 - random perturbation experiments

Issue - State: closed - Opened by blahah about 10 years ago - 1 comment
Labels: figure, analysis

#16 - do parameter sweep with each assembler for each species

Issue - State: closed - Opened by blahah about 10 years ago
Labels: figure, analysis

#16 - do parameter sweep with each assembler for each species

Issue - State: closed - Opened by blahah about 10 years ago
Labels: figure, analysis

#15 - Criterion for minimal read evidence

Issue - State: closed - Opened by blahah about 10 years ago
Labels: analysis

#15 - Criterion for minimal read evidence

Issue - State: closed - Opened by blahah about 10 years ago
Labels: analysis

#14 - Segmentation score assessment (post mtg 2014/11/18)

Issue - State: closed - Opened by blahah about 10 years ago
Labels: figure, analysis

#14 - Segmentation score assessment (post mtg 2014/11/18)

Issue - State: closed - Opened by blahah about 10 years ago
Labels: figure, analysis

#13 - Score assessment changes post meeting on 2014/11/18

Issue - State: closed - Opened by blahah about 10 years ago - 2 comments
Labels: figure

#13 - Score assessment changes post meeting on 2014/11/18

Issue - State: closed - Opened by blahah about 10 years ago - 2 comments
Labels: figure

#12 - TSA and simulation

Pull Request - State: closed - Opened by cboursnell about 10 years ago

#12 - TSA and simulation

Pull Request - State: closed - Opened by cboursnell about 10 years ago

#11 - add all analysis stages and plotting into the main app

Issue - State: closed - Opened by blahah over 10 years ago
Labels: figure, analysis

#11 - add all analysis stages and plotting into the main app

Issue - State: closed - Opened by blahah over 10 years ago
Labels: figure, analysis

#10 - figure5: add panels with scores for simulated assemblies

Issue - State: closed - Opened by blahah over 10 years ago - 1 comment
Labels: figure, analysis

#10 - figure5: add panels with scores for simulated assemblies

Issue - State: closed - Opened by blahah over 10 years ago - 1 comment
Labels: figure, analysis

#9 - segmentation: validate by simulation

Issue - State: closed - Opened by blahah over 10 years ago
Labels: analysis

#9 - segmentation: validate by simulation

Issue - State: closed - Opened by blahah over 10 years ago
Labels: analysis

#8 - figure5: explore plot options

Issue - State: closed - Opened by blahah over 10 years ago - 1 comment
Labels: figure