Ecosyste.ms: Issues

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GitHub / blahah/assemblotron issues and pull requests

#32 - Add bridger

Issue - State: open - Opened by blahah almost 9 years ago
Labels: assembler

#31 - Add RNAspades

Issue - State: open - Opened by blahah almost 9 years ago - 1 comment
Labels: assembler

#30 - fixes for soap de novo trans tests

Pull Request - State: closed - Opened by cboursnell almost 9 years ago

#29 - fix hard coded values in idba_tran

Pull Request - State: closed - Opened by cboursnell almost 9 years ago

#28 - Allow replicates

Issue - State: open - Opened by blahah almost 9 years ago

#27 - Add alternative strategy: per-partition optimisation

Issue - State: open - Opened by blahah about 9 years ago
Labels: enhancement

#26 - Allow user to set sampler seed

Issue - State: closed - Opened by blahah over 9 years ago
Labels: enhancement

#25 - Robust strategy for handling assembler crashes

Issue - State: open - Opened by blahah over 9 years ago
Labels: enhancement

#24 - Documentation

Issue - State: open - Opened by blahah over 9 years ago
Labels: enhancement

#23 - Subset reads by sampling connected graph components

Issue - State: closed - Opened by blahah over 9 years ago - 1 comment

#22 - Don't require any specific assembler to be present

Issue - State: closed - Opened by blahah over 9 years ago

#21 - Offer option to download assemblers

Issue - State: closed - Opened by blahah over 9 years ago

#20 - Print help when no arguments are supplied

Issue - State: closed - Opened by blahah over 9 years ago

#18 - Eliminate the subcommand system

Issue - State: closed - Opened by blahah over 9 years ago

#17 - Add assembly merging

Issue - State: closed - Opened by blahah over 9 years ago - 5 comments
Labels: enhancement

#16 - Progress meter and estimated time to finish

Issue - State: closed - Opened by blahah almost 10 years ago
Labels: enhancement

#15 - Coherent logging throughout

Issue - State: open - Opened by blahah over 10 years ago
Labels: enhancement

#14 - Choose Optimiser from Biopsy when running

Issue - State: closed - Opened by cboursnell over 10 years ago - 1 comment

#13 - Update sample.rb

Pull Request - State: closed - Opened by cboursnell over 10 years ago

#12 - Reservoir sampling in C

Pull Request - State: closed - Opened by blahah over 10 years ago

#11 - Reservoir Sampling in C

Pull Request - State: closed - Opened by cboursnell over 10 years ago

#10 - Update sample.rb

Pull Request - State: closed - Opened by cboursnell over 10 years ago

#9 - fix Soap tests, add test for config file input

Pull Request - State: closed - Opened by blahah over 10 years ago

#8 - add SoapDenovo Trans

Issue - State: closed - Opened by blahah over 10 years ago
Labels: enhancement, assembler

#7 - input read reservoir subsampler implemented

Pull Request - State: closed - Opened by blahah over 10 years ago

#6 - add ReadJoiner

Issue - State: open - Opened by blahah over 10 years ago
Labels: enhancement, assembler

#5 - add AbySS

Issue - State: open - Opened by blahah over 10 years ago
Labels: enhancement, assembler

#4 - add IDBA-tran

Issue - State: closed - Opened by blahah over 10 years ago
Labels: enhancement, assembler

#3 - perform final assembly after optimisation

Issue - State: closed - Opened by blahah over 10 years ago
Labels: enhancement

#2 - add input read subsampling

Issue - State: closed - Opened by blahah over 10 years ago
Labels: enhancement

#1 - fixes to loading config file and a few other little things

Pull Request - State: open - Opened by cboursnell almost 11 years ago - 1 comment