Ecosyste.ms: Issues

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GitHub / blachlylab/mucor issues and pull requests

#20 - feature_and_mutation_by_sample

Issue - State: open - Opened by pkhoueiry over 7 years ago - 1 comment
Labels: bug

#19 - Add input function for databases

Issue - State: open - Opened by jblachly almost 8 years ago
Labels: enhancement

#18 - Exchange HTSeq VCF reader for PyVCF

Issue - State: open - Opened by jblachly almost 8 years ago - 2 comments
Labels: enhancement

#17 - Use the ANNfield module for SnpEFF/Annovar ANN= field parsing

Issue - State: open - Opened by jblachly almost 8 years ago
Labels: enhancement

#16 - Support cloud/remote service based database id lookup

Issue - State: open - Opened by jblachly almost 8 years ago
Labels: enhancement

#15 - Move to python 3

Issue - State: open - Opened by jblachly almost 8 years ago - 1 comment
Labels: enhancement

#14 - Refactor

Issue - State: open - Opened by kwkroll32 about 8 years ago - 1 comment
Labels: enhancement

#13 - fixes #12 by removing the sparsify argument

Pull Request - State: open - Opened by kwkroll32 about 8 years ago

#12 - Pandas.DataFrame.to_csv() unexpected argument sparsify

Issue - State: open - Opened by kwkroll32 about 8 years ago - 2 comments
Labels: bug

#11 - FEATURE REQUEST: support for varscan txt output

Issue - State: open - Opened by die4live over 8 years ago - 3 comments
Labels: enhancement

#10 - snpEFF effects should not be re-ordered

Issue - State: open - Opened by jblachly almost 9 years ago - 1 comment
Labels: enhancement

#9 - count / freq includes all non-zero depths even if no "ALT" reads

Issue - State: open - Opened by jblachly almost 9 years ago
Labels: bug

#8 - Galaxy wrapper

Issue - State: open - Opened by jblachly about 9 years ago
Labels: enhancement

#7 - split "variant_details" into respective columns

Issue - State: open - Opened by kwkroll32 about 9 years ago - 1 comment
Labels: enhancement

#6 - Rename GenericINFO

Issue - State: closed - Opened by jblachly over 9 years ago

#5 - config: example config generator includes relative paths

Issue - State: open - Opened by jblachly over 9 years ago - 1 comment
Labels: bug

#4 - config: make directory crawling and filename matching optional

Issue - State: closed - Opened by jblachly over 9 years ago
Labels: enhancement

#3 - config: retrieve sample ID from VCF files by default

Issue - State: closed - Opened by jblachly over 9 years ago - 1 comment
Labels: enhancement

#2 - config: add flag to pass VCF file names at config time

Issue - State: closed - Opened by jblachly over 9 years ago - 1 comment
Labels: enhancement

#1 - BAM files in config should go in files block

Issue - State: closed - Opened by jblachly over 9 years ago - 1 comment