Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bjtully/BioData issues and pull requests

#66 - Update build system to flit_core

Pull Request - State: open - Opened by takluyver 27 days ago

#65 - Issues with istalling Keggdecoder.

Issue - State: open - Opened by chrissy005 2 months ago - 4 comments

#64 - how to make a joint input table for different bins

Issue - State: open - Opened by Khattab2022 5 months ago

#63 - Mistake in function mixedacid()

Issue - State: open - Opened by Naosugiyama 7 months ago

#62 - KEGG pathways version information?

Issue - State: closed - Opened by rrohwer about 1 year ago - 1 comment

#61 - removed single-underscore requirement

Pull Request - State: open - Opened by CalvinRusley over 1 year ago

#60 - filter out low-completion pathways

Issue - State: open - Opened by jorondo1 about 2 years ago

#59 - Carotenoid backbone biosynthesis K numbers

Issue - State: open - Opened by carlagreco over 2 years ago

#58 - methanogenesis via methylamines grouping

Issue - State: closed - Opened by AstrobioMike almost 3 years ago - 2 comments

#57 - ref ko of the rTCA completeness

Issue - State: closed - Opened by TianyiChang about 3 years ago

#56 - Recursion error

Issue - State: closed - Opened by wichne about 3 years ago - 3 comments

#55 - TSV output format

Issue - State: closed - Opened by zooniikayler over 3 years ago - 1 comment

#54 - KEGGDecoder: Amino acid pathways not visible on heatmap, -v interactive error

Issue - State: closed - Opened by maherrl over 3 years ago - 4 comments

#53 - Update KEGG_decoder.py

Pull Request - State: closed - Opened by achmall over 3 years ago

#52 - about the KEGG_decoder.py

Issue - State: closed - Opened by caris1988 almost 4 years ago - 1 comment

#51 - RecursionError: maximum recursion depth exceeded while calling a Python object

Issue - State: closed - Opened by ShailNair almost 4 years ago - 1 comment

#50 - Regarding Kegg_decoder and expander

Issue - State: closed - Opened by ShailNair almost 4 years ago - 6 comments

#49 - Wood Ljungdahl Defintions

Issue - State: closed - Opened by waoverholt about 4 years ago - 1 comment

#48 - truncate heatmap from KEGGDecoder

Issue - State: closed - Opened by liupfskygre over 4 years ago - 3 comments

#47 - Updating coding for V1.2

Pull Request - State: closed - Opened by bjtully over 4 years ago

#46 - Small update that adds plastic, carbon, and phosphate storage

Pull Request - State: closed - Opened by bjtully over 4 years ago

#44 - pip installation not working with python 3.8

Issue - State: closed - Opened by hdore over 4 years ago - 3 comments

#43 - Running a customized KEGG_decoder.py

Issue - State: closed - Opened by cssulliv over 4 years ago - 4 comments

#42 - Make KEGGDecoder pipeline complete

Pull Request - State: closed - Opened by cjneely10 almost 5 years ago

#41 - Update to include amino acid biosynthesis pathways

Pull Request - State: closed - Opened by bjtully almost 5 years ago

#40 - Update to V1.0.6 includes amino acid biosynthesis

Pull Request - State: closed - Opened by bjtully almost 5 years ago

#39 - Update to V1.0.6 includes amino acid biosynthesis

Pull Request - State: closed - Opened by bjtully almost 5 years ago

#38 - what cut-off to use for "almost complete" pathways?

Issue - State: closed - Opened by Jigyasa3 almost 5 years ago - 1 comment

#37 - TypeError: descriptor '__subclasses__' of 'type' object needs an argument

Issue - State: closed - Opened by Jigyasa3 almost 5 years ago - 1 comment

#35 - ubiquinol-cytochrome c reductase

Issue - State: closed - Opened by gchadwick about 5 years ago - 1 comment

#34 - Add images for binder

Pull Request - State: closed - Opened by cjneely10 about 5 years ago

#33 - Remove padding from static image

Pull Request - State: closed - Opened by cjneely10 about 5 years ago - 1 comment

#32 - Part 1 - please build pip installation and we will test these additions

Pull Request - State: closed - Opened by cjneely10 about 5 years ago - 1 comment

#31 - Speeding Up Science upgrade to V1.0.5

Pull Request - State: closed - Opened by bjtully about 5 years ago

#30 - Integrate tanglegram changes

Pull Request - State: closed - Opened by cjneely10 about 5 years ago

#29 - Speeding Up Science Day 2 updates

Pull Request - State: closed - Opened by bjtully about 5 years ago

#28 - Updates part 1

Pull Request - State: closed - Opened by cjneely10 about 5 years ago - 1 comment

#27 - Additions from Day 1

Pull Request - State: closed - Opened by cjneely10 about 5 years ago

#26 - Python3 compliant Expander script V.1.0.2.2

Pull Request - State: closed - Opened by bjtully about 5 years ago

#25 - correct typo for V.1.0.2.1

Pull Request - State: closed - Opened by bjtully about 5 years ago

#24 - Update code elements for V.1.0.2

Pull Request - State: closed - Opened by bjtully about 5 years ago

#23 - Can Kegg decoder be adapted to predict the completeness of Kegg modules?

Issue - State: closed - Opened by SilasK about 5 years ago - 3 comments

#22 - add dependency to tanglegram

Pull Request - State: closed - Opened by taylorreiter over 5 years ago - 3 comments

#21 - "Bio" module not installing properly

Issue - State: closed - Opened by bjtully over 5 years ago - 11 comments
Labels: bug

#19 - SVG & HTML output

Issue - State: closed - Opened by sarah872 over 5 years ago - 3 comments
Labels: bug

#18 - ValueError: The number of observations cannot be determined on an empty distance matrix.

Issue - State: closed - Opened by sarah872 over 5 years ago - 6 comments
Labels: bug

#17 - update pypi install to accomodate tanglegram

Issue - State: closed - Opened by taylorreiter over 5 years ago - 4 comments

#16 - enable user to specify name of output graphic

Issue - State: closed - Opened by taylorreiter over 5 years ago - 1 comment

#15 - add support for tanglegram

Pull Request - State: closed - Opened by taylorreiter over 5 years ago - 5 comments

#14 - Update to README

Pull Request - State: closed - Opened by bjtully over 5 years ago

#13 - Update to 0.8.8

Pull Request - State: closed - Opened by bjtully over 5 years ago

#12 - Update to 0.8.6. Updates README and small quality of lie changes

Pull Request - State: closed - Opened by bjtully over 5 years ago - 2 comments

#11 - Tests for CLI

Pull Request - State: closed - Opened by luizirber over 5 years ago - 2 comments

#10 - Update to 0.8.2 corrects placement of matplotlib plt

Pull Request - State: closed - Opened by bjtully over 5 years ago

#9 - Set up travis for continuous integration

Pull Request - State: closed - Opened by luizirber over 5 years ago - 1 comment

#8 - Plotly Visualization Update

Pull Request - State: closed - Opened by rotheconrad over 5 years ago

#7 - Working

Pull Request - State: closed - Opened by bjtully over 5 years ago

#6 - add arsenic test

Pull Request - State: closed - Opened by taylorreiter over 5 years ago

#5 - Import info adjustment

Pull Request - State: closed - Opened by bjtully over 5 years ago

#4 - Plotly

Pull Request - State: closed - Opened by rotheconrad over 5 years ago

#3 - associate citations with pathways?

Issue - State: open - Opened by taylorreiter over 5 years ago

#2 - Setting up CI and automated tests

Pull Request - State: closed - Opened by luizirber over 5 years ago

#1 - How to calculate the value of pathway?

Issue - State: closed - Opened by xuechunxu almost 6 years ago - 1 comment