Ecosyste.ms: Issues

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GitHub / birdflow-science/birdflowr issues and pull requests

#209 - Dynamic mask index conversions

Pull Request - State: open - Opened by ethanplunkett about 20 hours ago

#208 - Error when attempting to install BirdFlowR

Issue - State: open - Opened by rsmiller74 25 days ago - 3 comments

#207 - Use `date` column to calculate `stay_len` and `stay_id`

Issue - State: open - Opened by chenyangkang 27 days ago - 1 comment

#206 - Move `preprocess_species.R` to BirdFlowPipeline

Issue - State: open - Opened by chenyangkang 27 days ago - 1 comment

#205 - Inconsistent columns in dates among models in BirdFlowModels

Issue - State: closed - Opened by chenyangkang 28 days ago - 3 comments

#205 - Inconsistent columns in dates among models in BirdFlowModels

Issue - State: closed - Opened by chenyangkang 28 days ago - 3 comments

#204 - Implement the RoutesDataClass as a generic data format

Pull Request - State: open - Opened by chenyangkang 28 days ago - 13 comments

#203 - Delete old birdflow_crs object

Issue - State: open - Opened by ethanplunkett about 1 month ago - 2 comments

#202 - Make a unified data format (data class) for tracking & banding data

Issue - State: open - Opened by chenyangkang about 1 month ago - 15 comments

#200 - Polygon movement

Pull Request - State: closed - Opened by ethanplunkett 4 months ago

#199 - Moved build_collection_index() to BirdFlowPipeline

Pull Request - State: closed - Opened by ethanplunkett 5 months ago

#198 - Plot loss

Pull Request - State: closed - Opened by ethanplunkett 5 months ago

#197 - import_birdflow() should close rhdf5 handle

Issue - State: open - Opened by ethanplunkett 5 months ago

#196 - Minor things

Issue - State: open - Opened by ethanplunkett 7 months ago

#195 - Convert Model Collections to hdf5?

Issue - State: open - Opened by ethanplunkett 8 months ago

#194 - License / terms for models in model collections

Issue - State: open - Opened by dsheldon 8 months ago

#193 - Add trim_quantile argument to preprocess_species()

Pull Request - State: closed - Opened by ethanplunkett 8 months ago

#190 - Allow NA in season date metadata from eBird

Pull Request - State: closed - Opened by ethanplunkett 8 months ago

#189 - Outliers

Issue - State: closed - Opened by ethanplunkett 8 months ago - 11 comments

#188 - Update code coverage action.

Pull Request - State: closed - Opened by ethanplunkett 8 months ago

#187 - 186 add plot transformation options

Pull Request - State: closed - Opened by ethanplunkett 8 months ago

#187 - 186 add plot transformation options

Pull Request - State: closed - Opened by ethanplunkett 8 months ago

#186 - Add log scaling option to plot_abundance()

Issue - State: closed - Opened by ethanplunkett 9 months ago

#185 - Fix bug in preprocess_species()

Pull Request - State: closed - Opened by ethanplunkett 9 months ago

#184 - update callaghan abundance based on common name matches

Pull Request - State: closed - Opened by ethanplunkett 9 months ago

#183 - Add get_population() and callaghan_abundance (dataset)

Pull Request - State: closed - Opened by ethanplunkett 9 months ago

#182 - fix bug in example data for rmarkdwon collection index

Pull Request - State: closed - Opened by ethanplunkett 9 months ago

#181 - 177 import preprocessed hdf5

Pull Request - State: closed - Opened by ethanplunkett 10 months ago

#180 - Update calc_flux() and plot_flux()

Pull Request - State: closed - Opened by ethanplunkett 10 months ago - 1 comment

#179 - Reduce number of imports

Issue - State: open - Opened by ethanplunkett 11 months ago

#179 - Reduce number of imports

Issue - State: open - Opened by ethanplunkett 11 months ago

#178 - Update calc_flux()

Pull Request - State: closed - Opened by ethanplunkett 11 months ago

#177 - Import preprocessed hdf5

Issue - State: closed - Opened by ethanplunkett 11 months ago - 1 comment

#176 - 123 bird flux

Pull Request - State: closed - Opened by ethanplunkett 11 months ago

#175 - Add shrink_birdflow(), shrink_geom()

Pull Request - State: closed - Opened by ethanplunkett 11 months ago

#174 - Update export_rasters() with flexible file naming.

Pull Request - State: closed - Opened by ethanplunkett 11 months ago

#172 - add preprocess_species test with crs

Pull Request - State: closed - Opened by ethanplunkett 12 months ago - 1 comment

#171 - Export `ebirdst_pkg_ver()` and add argument `year_only=FALSE`

Issue - State: closed - Opened by ethanplunkett about 1 year ago - 1 comment

#170 - Models don't coincide

Issue - State: open - Opened by ethanplunkett about 1 year ago - 1 comment

#169 - Add distance based performance metric

Issue - State: closed - Opened by ethanplunkett about 1 year ago - 2 comments

#168 - preprocessing hdf5 writing nchar max warning

Issue - State: closed - Opened by slager about 1 year ago - 2 comments

#167 - preprocessing GDAL warnings

Issue - State: closed - Opened by slager about 1 year ago - 2 comments

#166 - No abundance

Pull Request - State: closed - Opened by ethanplunkett about 1 year ago

#165 - don't rename hdf file when clipped

Issue - State: open - Opened by slager about 1 year ago - 1 comment

#164 - better error message for unsupported argument length to get_metadata()

Pull Request - State: closed - Opened by slager about 1 year ago - 1 comment

#163 - lookup_timestep() results and tests as expected for NA input

Pull Request - State: closed - Opened by slager about 1 year ago - 1 comment

#162 - add rnaturalearthhires to Suggests and Remotes in DESCRIPTION?

Issue - State: closed - Opened by slager about 1 year ago - 2 comments

#161 - Fix export_raster() and snap_to_birdflow()

Pull Request - State: closed - Opened by ethanplunkett about 1 year ago

#160 - always override old date column name

Pull Request - State: closed - Opened by slager about 1 year ago - 3 comments

#159 - Fix snap for preprocessed

Pull Request - State: closed - Opened by ethanplunkett about 1 year ago

#157 - Add snap_to_birdflow() and lookup_date()

Pull Request - State: closed - Opened by ethanplunkett about 1 year ago

#156 - Break up BirdFlowR

Issue - State: open - Opened by ethanplunkett about 1 year ago - 1 comment

#155 - Function to align bird movement data with a BirdFlow model.

Issue - State: closed - Opened by ethanplunkett about 1 year ago - 2 comments

#154 - Add combine_transitions()

Pull Request - State: closed - Opened by ethanplunkett about 1 year ago

#153 - Speed up testing

Pull Request - State: closed - Opened by ethanplunkett about 1 year ago

#152 - Add tests and update message handling

Pull Request - State: closed - Opened by ethanplunkett about 1 year ago

#151 - update sparsification for dynamically masked models

Pull Request - State: closed - Opened by ethanplunkett about 1 year ago

#150 - 147 additional testing

Pull Request - State: closed - Opened by ethanplunkett about 1 year ago

#149 - Tweaks

Pull Request - State: closed - Opened by slager about 1 year ago - 1 comment

#148 - Preprocess 2022

Pull Request - State: closed - Opened by ethanplunkett about 1 year ago

#146 - Function to calculate migratory connectivity metric from routes-like object

Issue - State: open - Opened by slager about 1 year ago - 2 comments

#145 - Updated tests to work with new example data

Pull Request - State: closed - Opened by ethanplunkett about 1 year ago

#144 - Defensive changes after release of ebirdst 2022

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#143 - Update for ebirdst 2022

Issue - State: closed - Opened by ethanplunkett over 1 year ago - 1 comment

#142 - export_rasters and spell check package

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago - 1 comment

#141 - Followup on Luke's edits

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#140 - Documentationedits

Pull Request - State: closed - Opened by lukeruud over 1 year ago

#139 - Add export_tif() and pad_timestep() functions

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#138 - 132 add week column to dates + linting

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#137 - Can we make composite models?

Issue - State: closed - Opened by ethanplunkett over 1 year ago - 1 comment
Labels: enhancement, help wanted

#136 - Update build_collection()

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#135 - bf$dates$interval

Issue - State: closed - Opened by slager over 1 year ago - 1 comment

#134 - 128 plot distr

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#133 - New as_distr() converts rasters and points to distributions

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#132 - Add week column to dates

Issue - State: closed - Opened by ethanplunkett over 1 year ago

#131 - Preprocess

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#130 - Updated preproces_species(): add truncation, drop obscure arguments, refactor

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago - 1 comment

#129 - Edits to vignettes and collection_index

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#128 - plot_distr

Issue - State: closed - Opened by ethanplunkett over 1 year ago

#127 - Vignettes

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#126 - Collection updates

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#125 - fix bug in make_cache_readme()

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#124 - 111 model collections

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#123 - Bird flux

Issue - State: open - Opened by ethanplunkett over 1 year ago - 12 comments
Labels: enhancement

#122 - Progress on partial year models

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#121 - BirdFlowR:::get_date()

Issue - State: closed - Opened by slager over 1 year ago - 1 comment
Labels: bug

#120 - Update route plotting for truncated models

Issue - State: open - Opened by ethanplunkett over 1 year ago

#119 - pkgdown links to wrong predict()

Issue - State: closed - Opened by ethanplunkett over 1 year ago - 1 comment

#118 - 12 edge and island bias from cell aggregation

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#117 - Route revisions

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#116 - Facilitate users running predict on points

Issue - State: closed - Opened by ethanplunkett over 1 year ago - 1 comment

#115 - `predict()` and `route()` both need to validate input locations

Issue - State: open - Opened by ethanplunkett over 1 year ago - 1 comment

#114 - Added logo and code that creates it

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago - 1 comment

#113 - Various little things

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago

#112 - Added season argument to lookup_timestep_sequence

Pull Request - State: closed - Opened by ethanplunkett over 1 year ago