biowonks/projects issues and pull requests

#100 - Bump y18n from 4.0.0 to 4.0.1 in /core-lib

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#99 - Bump y18n from 4.0.0 to 4.0.1 in /mist-pipeline

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#98 - optimize fetching signal genes by kind

Pull Request - State: closed - Opened by lukeulrich over 3 years ago

#97 - GTDB module

Pull Request - State: closed - Opened by lukeulrich over 3 years ago

#96 - Clicking on bars of Signal transduction profile does not retrieve results

Issue - State: open - Opened by ToshkaDev over 3 years ago

#95 - Total count in 'Major modes' table does not give results

Issue - State: closed - Opened by ToshkaDev over 3 years ago - 2 comments

#94 - Bump csv-parse from 1.3.3 to 4.4.6 in /mist-pipeline

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#93 - Bump lodash.merge from 4.6.1 to 4.6.2 in /mist-pipeline

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#92 - "504 Gateway Time-out" or "502 Bad Gateway" when connecting to API for some pages and not others

Issue - State: closed - Opened by megarber over 3 years ago - 2 comments

#91 - Upgrade packages, BioSample module

Pull Request - State: closed - Opened by lukeulrich almost 4 years ago

#90 - per_page seems to give error for specific genome version

Issue - State: open - Opened by daviortega almost 4 years ago

#89 - metagenome assembled genomes module

Pull Request - State: closed - Opened by lukeulrich about 4 years ago

#88 - adds stable_ids to 'where' GET/POST in gene route

Pull Request - State: open - Opened by daviortega over 4 years ago

#87 - Inconsistent behaviour of /gene route of mist-api

Issue - State: open - Opened by daviortega over 4 years ago

#86 - Tmhmm2 fix

Pull Request - State: closed - Opened by daviortega over 4 years ago

#85 - BioSample module

Pull Request - State: closed - Opened by lukeulrich over 4 years ago - 1 comment

#84 - route /genomes/:version/genes hangs for some genomes with per_page attribute

Issue - State: open - Opened by daviortega over 4 years ago

#83 - Triple CheW wrongly classified as CheA

Issue - State: open - Opened by daviortega over 4 years ago

#82 - CheR definition on automated pipeline should be revised

Issue - State: open - Opened by daviortega over 4 years ago

#81 - Bump eslint from 3.19.0 to 6.8.0 in /mist-api

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#80 - Bump eslint from 3.19.0 to 6.8.0 in /mist-lib

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#79 - Bump eslint from 3.19.0 to 6.8.0 in /mist-pipeline

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#78 - Bump csv-parse from 1.3.3 to 4.8.2 in /mist-pipeline

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#77 - Bump eslint from 3.19.0 to 6.8.0 in /seqdepot-lib

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#76 - Allow search for 'version's for POST calls in /genomes/

Pull Request - State: closed - Opened by daviortega almost 5 years ago
Labels: enhancement

#75 - Genome POST route should allow field 'version' as query

Issue - State: closed - Opened by daviortega almost 5 years ago

#74 - Change the example genomes (GUI) to some that has chemotaxis and signal transduction: Azospirilum for example.

Issue - State: open - Opened by daviortega almost 5 years ago
Labels: help wanted, mist, Front-End

#73 - Support for search based on Domain Architecture

Issue - State: open - Opened by daviortega almost 5 years ago
Labels: Proposal

#72 - Bump sequelize from 5.6.0 to 5.21.2 in /mist-api

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#71 - Bump sequelize from 5.6.0 to 5.21.2 in /mist-pipeline

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#70 - Bump sequelize from 5.6.0 to 5.21.2 in /core-lib

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#69 - Bump sequelize from 5.6.0 to 5.21.2 in /mist-lib

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#68 - Bump sequelize from 5.6.0 to 5.21.2 in /seqdepot-lib

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#67 - model for signalGene should include function

Issue - State: open - Opened by daviortega about 5 years ago
Labels: enhancement

#66 - naked call for /signal-genes timeout with 504

Issue - State: open - Opened by daviortega about 5 years ago

#65 - filter "function" does not work in /signal-genes without kind

Issue - State: open - Opened by daviortega about 5 years ago

#64 - Page 'count' parameter can be provided in request body now:

Pull Request - State: closed - Opened by ToshkaDev over 5 years ago

#63 - Table of chemosensory (chemotaxis) components don't have a link to get all

Issue - State: open - Opened by daviortega over 5 years ago
Labels: enhancement, feature request, Front-End

#62 - Change chemotaxis to chemosensory everywhere.

Issue - State: open - Opened by daviortega over 5 years ago
Labels: academic, Proposal

#61 - new standard for header of exported fasta format

Issue - State: closed - Opened by daviortega over 5 years ago - 3 comments
Labels: wontfix, Proposal

#60 - Domain architecture mouse hovering behavior

Issue - State: open - Opened by daviortega over 5 years ago
Labels: enhancement, Front-End

#59 - Show TM regions in the Domain Architecture

Issue - State: open - Opened by daviortega over 5 years ago
Labels: feature request, Front-End

#58 - Finish implementation of TM predictions on the back end.

Issue - State: open - Opened by daviortega over 5 years ago - 1 comment

#57 - Should rename cart to dataset

Issue - State: open - Opened by daviortega over 5 years ago
Labels: Front-End

#56 - Download genes from cart should not require to reselect genes

Issue - State: open - Opened by daviortega over 5 years ago
Labels: enhancement, Front-End

#55 - POST routes for genes, genomes and signal-genes

Pull Request - State: closed - Opened by ToshkaDev over 5 years ago

#54 - Chemotaxis classification

Pull Request - State: closed - Opened by lukeulrich over 5 years ago

#53 - Domain architecture not to scale

Issue - State: open - Opened by daviortega over 5 years ago
Labels: Front-End

#52 - draft implementation of the POST genes route

Pull Request - State: open - Opened by lukeulrich over 5 years ago

#51 - Caulobacter crescentus CB15 not appearing in Genomes search

Issue - State: closed - Opened by daviortega over 5 years ago - 1 comment
Labels: bug, Front-End

#50 - route taxonomy/${taxid}/parents return 504 for taxid not in database

Issue - State: open - Opened by daviortega almost 6 years ago
Labels: bug

#49 - Genome GCF_000328405.1 missing TCS and chemotaxis.

Issue - State: open - Opened by daviortega about 6 years ago

#48 - Bug in route /genomes?where.taxonomy_id=

Issue - State: open - Opened by daviortega about 6 years ago

#47 - Domain architecture visualization enhancement

Issue - State: open - Opened by adebali about 6 years ago - 3 comments
Labels: enhancement

#46 - footer logos

Issue - State: closed - Opened by adebali about 6 years ago
Labels: enhancement

#45 - favicon

Issue - State: closed - Opened by adebali about 6 years ago
Labels: enhancement

#44 - Cart problem

Issue - State: closed - Opened by adebali about 6 years ago
Labels: bug

#43 - Correct line 125

Pull Request - State: closed - Opened by ToshkaDev about 6 years ago - 1 comment

#42 - Rename 'signal_genes' folder to 'signal-genes'. Add 'definition' attribute.

Pull Request - State: closed - Opened by ToshkaDev about 6 years ago

#41 - More signal transduction support

Pull Request - State: closed - Opened by lukeulrich about 6 years ago

#40 - Logic to calculate signal transduction profile and API route

Pull Request - State: closed - Opened by lukeulrich about 6 years ago

#39 - Signal transduction gene prediction

Pull Request - State: closed - Opened by lukeulrich about 6 years ago

#38 - Upgrade sequelize library to v4

Pull Request - State: closed - Opened by lukeulrich about 6 years ago