Ecosyste.ms: Issues

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GitHub / biothings/bte_trapi_query_graph_handler issues and pull requests

#215 - Tweak pathfinder Lookup Tables

Pull Request - State: open - Opened by tokebe 3 months ago

#214 - update tests for passing

Pull Request - State: closed - Opened by NeuralFlux 3 months ago

#213 - Recognize MCQ queries and respond with HTTP 501

Pull Request - State: closed - Opened by tokebe 3 months ago

#212 - fix: add `query_id` to inferred mode results if it exists

Pull Request - State: open - Opened by NeuralFlux 3 months ago - 1 comment

#211 - Reduce query ids by only using bound nodes for pfocr figure search

Pull Request - State: closed - Opened by tokebe 3 months ago - 3 comments
Labels: On Test -> Prod

#210 - Improve template logging

Pull Request - State: closed - Opened by tokebe 3 months ago - 1 comment

#209 - Update tests and GitHub Workflow

Pull Request - State: closed - Opened by NeuralFlux 3 months ago

#208 - fix subclassing, self graphs

Pull Request - State: closed - Opened by rjawesome 3 months ago

#207 - fix calculation of pfocr score

Pull Request - State: closed - Opened by rjawesome 4 months ago
Labels: On Test -> Prod

#206 - add biolink prefix to qualified_predicate

Pull Request - State: closed - Opened by andrewsu 4 months ago - 1 comment

#205 - do not include records with no curies in qedge

Pull Request - State: closed - Opened by rjawesome 4 months ago

#204 - fix: added original curies to results as `query_id`

Pull Request - State: closed - Opened by NeuralFlux 4 months ago

#203 - Inferred-mode response merging: use more specific criteria for direct-edge handling

Pull Request - State: closed - Opened by tokebe 4 months ago - 1 comment

#202 - New template system for pathfinder

Pull Request - State: closed - Opened by rjawesome 4 months ago

#201 - PFOCR Result enrichment support for nested support graphs

Pull Request - State: closed - Opened by tokebe 4 months ago

#200 - add qualifiers to creative edges

Pull Request - State: closed - Opened by rjawesome 4 months ago - 5 comments

#199 - Ngd timeout

Pull Request - State: closed - Opened by rjawesome 5 months ago

#198 - Single Subquery Queue

Pull Request - State: open - Opened by rjawesome 5 months ago

#197 - Run creative mode templates in parallel

Pull Request - State: open - Opened by rjawesome 5 months ago

#196 - export QEdge2APIEdgeHandler

Pull Request - State: open - Opened by rjawesome 5 months ago

#195 - Smartapi test

Pull Request - State: closed - Opened by rjawesome 5 months ago

#194 - Edge/Node constraints

Pull Request - State: open - Opened by rjawesome 6 months ago - 3 comments

#193 - Creative-mode timer

Pull Request - State: closed - Opened by rjawesome 7 months ago - 2 comments

#192 - Handle max_research_phase

Pull Request - State: closed - Opened by tokebe 7 months ago - 1 comment

#191 - Pathfinder

Pull Request - State: closed - Opened by tokebe 7 months ago

#190 - Add knowledge_level/agent_type to edges

Pull Request - State: closed - Opened by tokebe 8 months ago

#189 - Support `source_record_urls`

Pull Request - State: closed - Opened by tokebe 8 months ago

#188 - Add empty attributes property to node/edge bindings and aux-graphs

Pull Request - State: closed - Opened by tokebe 8 months ago

#187 - Use lookup_and_score

Pull Request - State: closed - Opened by tokebe 8 months ago

#186 - Support typescript migration/move redis client

Pull Request - State: closed - Opened by tokebe 8 months ago

#184 - feat: update templates for treats-refactor

Pull Request - State: closed - Opened by colleenXu 8 months ago

#183 - Use MetaKG from main thread, specs from redis (if avaliable)

Pull Request - State: closed - Opened by rjawesome 9 months ago

#182 - Speed up intersectWithExpandedCuries

Pull Request - State: closed - Opened by rjawesome 9 months ago
Labels: On Test

#181 - allow edge caching timeout to be disabled

Pull Request - State: closed - Opened by rjawesome 9 months ago

#180 - Revert "Merge pull request #178 from biothings/fix-775"

Pull Request - State: closed - Opened by colleenXu 9 months ago

#179 - migrate redis client to utils; use redis for registered apis

Pull Request - State: closed - Opened by rjawesome 10 months ago - 1 comment

#177 - Use instance-equivalent NGD

Pull Request - State: closed - Opened by tokebe 12 months ago
Labels: On Dev

#176 - Implement a batch size limit

Pull Request - State: closed - Opened by tokebe 12 months ago - 1 comment

#175 - Support periodic cache clearing

Pull Request - State: closed - Opened by tokebe 12 months ago - 2 comments

#174 - Concurrency improvements

Pull Request - State: closed - Opened by tokebe 12 months ago

#173 - feat: add batch-size-limit for ctd subquerying

Pull Request - State: closed - Opened by colleenXu 12 months ago

#172 - Avoid self-edges and self-subclassing

Pull Request - State: closed - Opened by tokebe almost 1 year ago

#171 - SRIResolverFailiure -> SRINodeNormFailure

Pull Request - State: closed - Opened by tokebe about 1 year ago

#170 - Migrate package to Typescript and new build system

Pull Request - State: closed - Opened by tokebe about 1 year ago - 2 comments
Labels: enhancement

#169 - Template revised (fixed merge conflicts)

Pull Request - State: closed - Opened by tokebe over 1 year ago - 4 comments

#168 - Template revised

Pull Request - State: closed - Opened by colleenXu over 1 year ago - 1 comment

#167 - Template revisions

Pull Request - State: closed - Opened by colleenXu over 1 year ago - 2 comments

#166 - Use service provider as source where appropriate

Pull Request - State: closed - Opened by tokebe over 1 year ago

#165 - Use centralized biolink/schema version tags

Pull Request - State: closed - Opened by tokebe over 1 year ago

#164 - Fix QueryResults and inferred_mode tests

Pull Request - State: closed - Opened by mnarayan1 over 1 year ago - 2 comments

#163 - #634: Scoring overhaul

Pull Request - State: closed - Opened by ericz1803 over 1 year ago

#162 - change value_type_id for publications

Pull Request - State: closed - Opened by rjawesome over 1 year ago

#161 - Sentry

Pull Request - State: closed - Opened by rjawesome over 1 year ago

#160 - Case insensitive prefix in smartapi/query

Pull Request - State: closed - Opened by rjawesome over 1 year ago - 4 comments

#159 - Fix category/name on KGNodes

Pull Request - State: closed - Opened by rjawesome over 1 year ago

#158 - remove nodes from pfocr

Pull Request - State: closed - Opened by rjawesome over 1 year ago

#157 - handle empty result for creative mode

Pull Request - State: closed - Opened by rjawesome over 1 year ago

#156 - handle empty/null results

Pull Request - State: closed - Opened by rjawesome over 1 year ago

#155 - fix: edit edge-attributes in hash for multiomics wellness

Pull Request - State: closed - Opened by colleenXu over 1 year ago

#154 - TRAPI 1.4 Subclassing

Pull Request - State: closed - Opened by tokebe over 1 year ago

#153 - fix: add some multiomics wellness edge-attributes to edge hash

Pull Request - State: closed - Opened by colleenXu over 1 year ago

#152 - process creative limit from options

Pull Request - State: closed - Opened by rjawesome over 1 year ago - 1 comment

#151 - case insensitve intersection of curies

Pull Request - State: closed - Opened by rjawesome over 1 year ago - 1 comment

#150 - TRAPI 1.4 Results format

Pull Request - State: closed - Opened by tokebe over 1 year ago

#149 - TRAPI 1.4: Provenance refactor

Pull Request - State: closed - Opened by tokebe over 1 year ago - 1 comment

#148 - Log apis for cached eges

Pull Request - State: closed - Opened by rjawesome over 1 year ago

#147 - Use SmartAPI ID to get primary source from API_LIST

Pull Request - State: closed - Opened by tokebe over 1 year ago - 3 comments

#146 - expand qualifiers using biolink hierarchy

Pull Request - State: closed - Opened by rjawesome over 1 year ago

#145 - TRAPI 1.4: Include TRAPI and SmartAPI versions in response

Pull Request - State: closed - Opened by tokebe over 1 year ago

#144 - qualifiers in metakg

Pull Request - State: closed - Opened by rjawesome over 1 year ago - 1 comment

#143 - TRAPI 1.4: Support Bull logging

Pull Request - State: closed - Opened by tokebe over 1 year ago - 1 comment

#142 - Support thread pool code

Pull Request - State: closed - Opened by tokebe over 1 year ago - 1 comment

#141 - handle null biolink

Pull Request - State: closed - Opened by rjawesome over 1 year ago - 1 comment

#140 - A small multitude of updates

Pull Request - State: closed - Opened by tokebe over 1 year ago

#139 - Normalize scores

Pull Request - State: closed - Opened by rjawesome over 1 year ago - 3 comments

#138 - Check primary knowledge source

Pull Request - State: closed - Opened by rjawesome over 1 year ago - 1 comment

#137 - Primary knowledge refactor

Pull Request - State: closed - Opened by rjawesome almost 2 years ago - 4 comments

#136 - Mock axios in tests

Pull Request - State: closed - Opened by rjawesome almost 2 years ago - 3 comments

#135 - edit chem-gene creative-mode templates

Pull Request - State: closed - Opened by colleenXu almost 2 years ago - 2 comments

#134 - Only add is_set if ids are expanded

Pull Request - State: closed - Opened by tokebe almost 2 years ago - 2 comments

#133 - Record cutoff

Pull Request - State: closed - Opened by tokebe almost 2 years ago

#132 - next creative-mode templates

Pull Request - State: closed - Opened by colleenXu almost 2 years ago - 1 comment

#131 - Augment TRAPI results using PFOCR data

Pull Request - State: closed - Opened by tokebe almost 2 years ago - 9 comments

#130 - Score ara only

Pull Request - State: closed - Opened by rjawesome almost 2 years ago - 2 comments

#129 - Add qualifiers

Pull Request - State: closed - Opened by tokebe almost 2 years ago - 3 comments

#128 - Allowing infores ids

Pull Request - State: closed - Opened by rjawesome about 2 years ago - 1 comment

#127 - Add tests

Pull Request - State: closed - Opened by tokebe about 2 years ago - 1 comment

#126 - Combine qedge

Pull Request - State: closed - Opened by rjawesome about 2 years ago - 12 comments

#125 - Check Qnode/Qedge properties

Pull Request - State: closed - Opened by rjawesome about 2 years ago - 12 comments

#124 - Move creative mode code to own file

Pull Request - State: closed - Opened by tokebe about 2 years ago - 1 comment

#123 - Handle null predicates, ids, and categories

Pull Request - State: closed - Opened by rjawesome about 2 years ago - 13 comments

#122 - handle SRI Resolver failiures

Pull Request - State: closed - Opened by rjawesome about 2 years ago - 1 comment

#121 - Use expand=both for ngd score

Pull Request - State: closed - Opened by tokebe over 2 years ago - 11 comments

#120 - Trapi1.3

Pull Request - State: closed - Opened by colleenXu over 2 years ago - 1 comment

#119 - Keep and trim results after reaching creative-limit

Pull Request - State: closed - Opened by tokebe over 2 years ago - 5 comments

#118 - fix workflow id

Pull Request - State: closed - Opened by rjawesome over 2 years ago - 2 comments

#117 - use canonical direction

Pull Request - State: closed - Opened by rjawesome over 2 years ago - 3 comments

#116 - Run test workflow with Codecov

Pull Request - State: closed - Opened by tokebe over 2 years ago