Ecosyste.ms: Issues

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GitHub / biothings/biothings.api issues and pull requests

#251 - Support multiple Elasticsearch hosts in Releases tab

Issue - State: closed - Opened by newgene about 2 years ago - 1 comment
Labels: enhancement

#250 - Create a command line tool to create a data plugin template

Issue - State: closed - Opened by newgene about 2 years ago - 1 comment
Labels: enhancement

#249 - Group hub logs from data sources into a dataload subfolder

Issue - State: closed - Opened by newgene about 2 years ago
Labels: enhancement

#248 - build time does not display correctly

Issue - State: closed - Opened by newgene about 2 years ago - 2 comments
Labels: bug

#247 - "UserWarning: MongoClient opened before fork" in hub logs

Issue - State: closed - Opened by newgene about 2 years ago - 1 comment
Labels: enhancement

#246 - Cannot quit hub's ssh console after upgrading asyncssh to 2.11.0

Issue - State: closed - Opened by newgene about 2 years ago
Labels: bug

#245 - Allow YAML-based manifest file in a data plugin

Issue - State: closed - Opened by newgene about 2 years ago
Labels: enhancement

#242 - Store metadata of the last successful dump and upload events

Issue - State: closed - Opened by newgene about 2 years ago
Labels: enhancement

#240 - Fix to MyVariant Issue#103

Pull Request - State: closed - Opened by erikyao over 2 years ago

#239 - manage the dependency of `jsondiff` and `jsonpatch`

Issue - State: open - Opened by erikyao over 2 years ago - 1 comment
Labels: enhancement

#237 - ReleaseManager does not read "move" operation from jsondiff results

Issue - State: open - Opened by erikyao over 2 years ago - 2 comments
Labels: bug

#236 - display optional "description" in API metadata

Issue - State: closed - Opened by andrewsu over 2 years ago - 7 comments
Labels: enhancement

#235 - try to systematically update data in biothings.ncats.io APIs

Issue - State: open - Opened by andrewsu over 2 years ago - 4 comments
Labels: data source

#234 - Remove weak etag prefix in version strings

Pull Request - State: closed - Opened by ravila4 over 2 years ago

#233 - Fetch >1000 documents with a POST query

Issue - State: closed - Opened by erikyao over 2 years ago - 12 comments
Labels: enhancement

#232 - Allow to update src mapping only?

Issue - State: closed - Opened by newgene over 2 years ago - 2 comments
Labels: enhancement

#231 - Allow to update src metadata only?

Issue - State: closed - Opened by newgene over 2 years ago
Labels: enhancement

#230 - Add dumper and uploader timestamps in source metadata

Issue - State: closed - Opened by ravila4 over 2 years ago - 1 comment
Labels: enhancement

#229 - Update biothings studio tutorial with the latest docker image

Issue - State: closed - Opened by newgene over 2 years ago
Labels: enhancement

#228 - Can manifest-based data plugins and regular data sources stay in the same folder?

Issue - State: closed - Opened by newgene over 2 years ago - 5 comments
Labels: enhancement

#227 - Better documenting how to create manifest-based data plugin

Issue - State: open - Opened by newgene over 2 years ago
Labels: enhancement

#226 - Support `tar.bz2` format for dumpers' "uncompress" feature

Issue - State: open - Opened by erikyao over 2 years ago - 1 comment
Labels: enhancement

#225 - Allow to index a data source to ES directly

Issue - State: closed - Opened by newgene over 2 years ago - 1 comment
Labels: enhancement

#224 - get_python_version in utils.version does not return the correct package list

Issue - State: closed - Opened by newgene over 2 years ago
Labels: bug

#223 - Inconsistent results when changing node category with identifier

Issue - State: closed - Opened by maximusunc over 2 years ago - 2 comments

#222 - upgrade to pymongo v4

Issue - State: closed - Opened by newgene over 2 years ago
Labels: enhancement

#221 - Migrate to use Google Analytics 4 for usage tracking

Issue - State: closed - Opened by newgene over 2 years ago - 1 comment
Labels: enhancement

#220 - ES8 fix for the hub release step

Issue - State: closed - Opened by newgene over 2 years ago - 1 comment
Labels: enhancement

#219 - consider adding default retry settings for Elasticsearch client

Issue - State: closed - Opened by newgene over 2 years ago - 1 comment
Labels: enhancement

#218 - refactor `_parse_comments` method logic

Issue - State: closed - Opened by newgene over 2 years ago
Labels: enhancement

#217 - Create hub's default settings

Issue - State: closed - Opened by newgene over 2 years ago
Labels: enhancement

#216 - Hub console improvements

Issue - State: closed - Opened by newgene over 2 years ago

#215 - We might be hitting the quota of Google Analytics

Issue - State: closed - Opened by newgene over 2 years ago - 1 comment

#214 - Make sure pageview hit sent before event hit in Google analytics tracking

Issue - State: open - Opened by newgene over 2 years ago
Labels: bug

#213 - Update bulk endpoint for es8: ingesting data in local webapp tests.

Pull Request - State: closed - Opened by ravila4 over 2 years ago

#212 - Error setting up ES for tests

Issue - State: closed - Opened by ravila4 over 2 years ago - 1 comment

#211 - switch to use TimedRotatingFileHandler for hub log files

Issue - State: closed - Opened by newgene over 2 years ago - 1 comment
Labels: enhancement

#210 - remove redundant and unused hub log file

Issue - State: closed - Opened by newgene over 2 years ago
Labels: enhancement

#209 - Adding build doc adapter for release note generation

Issue - State: open - Opened by erikyao over 2 years ago - 2 comments

#208 - Support post_filter query parameter

Issue - State: closed - Opened by newgene over 2 years ago - 3 comments
Labels: enhancement

#207 - Add default cookie authn provider

Pull Request - State: closed - Opened by ravila4 over 2 years ago

#206 - allow customize cache settings

Issue - State: closed - Opened by newgene over 2 years ago - 1 comment
Labels: enhancement

#205 - Add new sentry package

Pull Request - State: closed - Opened by sengineer0 over 2 years ago

#204 - upgrade to use sentry-sdk

Issue - State: closed - Opened by newgene over 2 years ago
Labels: enhancement

#203 - Update base.py

Pull Request - State: closed - Opened by jal347 almost 3 years ago - 1 comment

#199 - [low priority] AIOHttp Session is Closed on `/status`

Issue - State: closed - Opened by zcqian almost 3 years ago - 1 comment
Labels: bug

#195 - support exclude for "fields" parameter

Issue - State: closed - Opened by newgene almost 3 years ago - 2 comments
Labels: enhancement

#183 - access stats not displaying

Issue - State: closed - Opened by andrewsu about 3 years ago - 1 comment

#181 - Use orjson for biothings.web

Issue - State: closed - Opened by namespacestd0 about 3 years ago - 1 comment
Labels: enhancement

#180 - Upgrade aiocron to 1.6

Issue - State: closed - Opened by namespacestd0 about 3 years ago

#179 - `SnapshotTaskEnv` cannot create `ESIndexer` instances

Issue - State: closed - Opened by erikyao about 3 years ago - 6 comments

#176 - Hub logging files were created daily, but log messages were not redirected

Issue - State: closed - Opened by newgene about 3 years ago - 1 comment
Labels: bug

#174 - Update biothings.web docs

Issue - State: closed - Opened by newgene about 3 years ago - 1 comment
Labels: enhancement

#170 - Hub API does not return timestamps with timezone info

Issue - State: closed - Opened by newgene about 3 years ago - 4 comments

#163 - UI for mode='purge' when creating a New Release

Issue - State: open - Opened by juliamullen over 3 years ago
Labels: enhancement

#160 - `ESIndexer` relying on Elasticsearch `type`

Issue - State: closed - Opened by zcqian over 3 years ago - 1 comment

#157 - rename studio webapp, and move to top folder-level

Issue - State: closed - Opened by namespacestd0 over 3 years ago - 1 comment

#153 - using `ProcessPoolExecutor` in `set_default_executor`

Issue - State: closed - Opened by zcqian over 3 years ago

#145 - Implement utility to run data plugins outside hub

Issue - State: closed - Opened by zcqian over 3 years ago - 1 comment
Labels: enhancement

#144 - Re-implement manifest based plugins creation

Issue - State: closed - Opened by zcqian over 3 years ago - 1 comment
Labels: enhancement, wontfix

#143 - Refactor Dumper Classes

Issue - State: closed - Opened by zcqian over 3 years ago - 1 comment
Labels: enhancement

#134 - Implement full release installation without downtime

Issue - State: closed - Opened by newgene over 3 years ago - 6 comments
Labels: enhancement

#99 - Clicking 'Inspect Data' in Studio webapp fails to display new mapping until Sources tab is reloaded

Issue - State: closed - Opened by ravila4 almost 4 years ago - 1 comment
Labels: bug

#49 - POST query support multiple value combinations from multiple fields

Issue - State: closed - Opened by newgene about 5 years ago - 4 comments
Labels: enhancement

#23 - URL for biothings hub config example needs to be fixed in documentation

Issue - State: closed - Opened by kevinxin90 about 6 years ago - 1 comment
Labels: bug