biotaphy/analyses issues and pull requests

#73 - Move repository to "biotaphy"

Issue - State: open - Opened by cjgrady almost 5 years ago

#72 - Version 2.0.0

Pull Request - State: closed - Opened by cjgrady almost 5 years ago - 2 comments

#71 - Compute phylo beta diversity for sorensen index family

Issue - State: open - Opened by todo[bot] almost 5 years ago
Labels: todo :spiral_notepad:

#70 - Randomize tree, calc. metrics, save running average.

Issue - State: open - Opened by todo[bot] almost 5 years ago
Labels: todo :spiral_notepad:

#69 - Delete old projects?

Issue - State: closed - Opened by hmarx almost 5 years ago - 2 comments

#68 - No projections were returned. output message

Issue - State: closed - Opened by hmarx almost 5 years ago - 8 comments

#67 - Wrong OpenTree link

Issue - State: closed - Opened by snacktavish almost 5 years ago - 2 comments

#66 - Add contributors to release drafts

Pull Request - State: closed - Opened by cjgrady almost 5 years ago

#65 - A little more complicated version of release drafter

Pull Request - State: closed - Opened by cjgrady almost 5 years ago

#64 - Simplify release drafter config to bare bones

Pull Request - State: closed - Opened by cjgrady almost 5 years ago

#63 - Add support for Python 3.8

Pull Request - State: closed - Opened by cjgrady almost 5 years ago

#62 - Version 2.0.0

Pull Request - State: closed - Opened by cjgrady almost 5 years ago

#61 - Add quotes

Pull Request - State: closed - Opened by cjgrady almost 5 years ago

#60 - Version 2.0.0

Pull Request - State: closed - Opened by cjgrady almost 5 years ago
Labels: enhancement

#59 - Update sphinx docs to 2.2 and for analyses version 2.0

Issue - State: closed - Opened by cjgrady almost 5 years ago
Labels: documentation

#58 - SES.phylo.beta.div

Pull Request - State: closed - Opened by hmarx over 5 years ago - 3 comments

#57 - Tools for pbd

Pull Request - State: closed - Opened by cjgrady over 5 years ago
Labels: enhancement

#56 - added parameters to phylobeta div script

Pull Request - State: closed - Opened by hmarx over 5 years ago - 2 comments

#55 - Determine why release drafter does not seem to be working

Issue - State: closed - Opened by cjgrady over 5 years ago - 1 comment
Labels: bug

#54 - Move common Lifemapper modules to a different repository

Issue - State: closed - Opened by cjgrady over 5 years ago
Labels: enhancement

#53 - Document how to use phylo beta diversity

Issue - State: open - Opened by cjgrady over 5 years ago
Labels: help wanted, documentation

#52 - Add simple statistical helpers to repository

Issue - State: closed - Opened by cjgrady over 5 years ago
Labels: enhancement

#51 - Add a tree randomization method to the repository

Issue - State: closed - Opened by cjgrady over 5 years ago - 2 comments
Labels: enhancement, wontfix

#50 - Add PAM randomization method to repsitory

Issue - State: closed - Opened by cjgrady over 5 years ago
Labels: enhancement

#49 - New phylo tests

Pull Request - State: closed - Opened by hmarx over 5 years ago

#48 - Changed phylo beta div test method to use files

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#47 - Generic load methods

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#46 - Release 1.1.0

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#45 - Phylo beta diversity

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#44 - Add documentation explaining phylogenetic beta diversity

Issue - State: open - Opened by cjgrady over 5 years ago
Labels: documentation

#43 - Add additional test datasets for phylogentic beta diversity

Issue - State: closed - Opened by cjgrady over 5 years ago - 2 comments
Labels: testing

#42 - Simplify testing of phylogenetic beta diversity

Issue - State: closed - Opened by cjgrady over 5 years ago
Labels: enhancement, testing

#41 - Add a script for performing phylogenetic beta diversity

Issue - State: open - Opened by cjgrady over 5 years ago - 2 comments
Labels: enhancement, good first issue

#40 - Release 1.1.0

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#39 - Change matrix storage format to zip file

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#38 - Patch for 34

Pull Request - State: closed - Opened by brunkgr2 over 5 years ago

#37 - Fixes typo

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#36 - Travis tests fail intermittently on matrix load

Issue - State: closed - Opened by cjgrady over 5 years ago - 2 comments
Labels: bug, testing

#35 - Adds test parametrization fixtures

Pull Request - State: closed - Opened by cjgrady over 5 years ago
Labels: testing

#34 - Provide a general load alignment method from filename without providing schema

Issue - State: closed - Opened by cjgrady over 5 years ago - 1 comment
Labels: good first issue

#33 - Add a generic TreeWrapper method for loading tree from filename without specifying schema

Issue - State: closed - Opened by cjgrady over 5 years ago - 1 comment
Labels: good first issue

#32 - Update testing to use pytest.parametrization

Issue - State: closed - Opened by cjgrady over 5 years ago
Labels: enhancement

#31 - Py 3.3

Pull Request - State: closed - Opened by cjgrady over 5 years ago - 1 comment
Labels: enhancement

#30 - Initial commit of release drafter config

Pull Request - State: closed - Opened by cjgrady over 5 years ago - 2 comments
Labels: documentation

#29 - Add documentation build instructions

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#28 - Ryan doc changes

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#27 - Ryan doc changes

Pull Request - State: closed - Opened by cjgrady over 5 years ago
Labels: documentation

#26 - Update ancestral_distribution.rst

Pull Request - State: closed - Opened by ryanafolk over 5 years ago - 1 comment

#25 - Update format_phylip.rst

Pull Request - State: closed - Opened by ryanafolk over 5 years ago - 1 comment

#24 - Update about.rst

Pull Request - State: closed - Opened by ryanafolk over 5 years ago - 1 comment

#23 - Update repository topics for version 2.0.0

Issue - State: open - Opened by cjgrady over 5 years ago
Labels: help wanted, documentation

#22 - Release 1.0 documentation

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#21 - Adds test for script executable

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#20 - Updates README with some basic information

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#19 - PEP8 compiance updates

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#18 - Phylo beta diversity

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#17 - Release 1.0 documentation

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#16 - Add phylogenetic beta diversity to available metrics

Issue - State: closed - Opened by cjgrady over 5 years ago - 14 comments
Labels: enhancement

#15 - Moved docs root for html

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#14 - Correct typo

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#13 - Beta documentation for version 1.0.0

Pull Request - State: closed - Opened by cjgrady over 5 years ago

#12 - Add appropriate badging to repository

Issue - State: closed - Opened by cjgrady over 5 years ago - 5 comments
Labels: help wanted

#11 - Add topics to this repository to attract users

Issue - State: closed - Opened by cjgrady over 5 years ago - 2 comments
Labels: help wanted

#10 - Update readme with general documentation

Issue - State: closed - Opened by cjgrady over 5 years ago - 1 comment
Labels: documentation

#9 - Confidence intervals should be bounded between 0 and 1

Issue - State: closed - Opened by cjgrady over 5 years ago

#8 - Generate release level documentation

Issue - State: closed - Opened by cjgrady over 5 years ago - 1 comment

#7 - Ensure we have 100% test coverage for version 1.0

Issue - State: closed - Opened by cjgrady over 5 years ago - 1 comment

#6 - Release version 1.0

Issue - State: closed - Opened by cjgrady over 5 years ago - 1 comment

#5 - Add a code of conduct / contribution guide document to repository

Issue - State: closed - Opened by cjgrady over 5 years ago - 1 comment

#4 - Add tests for binaries

Issue - State: closed - Opened by cjgrady over 5 years ago

#3 - Provide documentation for data formats

Issue - State: closed - Opened by cjgrady almost 6 years ago - 1 comment

#2 - Ryan reports that CSV format is not working for ancestral state reconstruction

Issue - State: closed - Opened by cjgrady almost 6 years ago - 1 comment

#1 - Provide Python 3.5 support

Issue - State: closed - Opened by cjgrady about 6 years ago - 1 comment

GitHub / biotaphy/analyses issues and pull requests