Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / biosustain/grasp issues and pull requests

#63 - Fixed issues with calculateMMCurves

Pull Request - State: closed - Opened by martamatos about 5 years ago

#62 - Fix: fixed little issue with plotControlAndResponseAnalysis

Pull Request - State: closed - Opened by martamatos about 5 years ago

#61 - Analysis restructure

Pull Request - State: closed - Opened by martamatos about 5 years ago

#60 - Update flux units

Pull Request - State: closed - Opened by martamatos about 5 years ago

#59 - Automate vmax calc

Pull Request - State: closed - Opened by martamatos about 5 years ago

#58 - Plot control and response

Pull Request - State: closed - Opened by de-leeuw about 5 years ago

#57 - Fix: fixed plotControlAnalysis categories

Pull Request - State: closed - Opened by de-leeuw about 5 years ago

#56 - Fix: fixed fixedExchange + updated respective tests

Pull Request - State: closed - Opened by martamatos about 5 years ago

#55 - Fix mass action

Pull Request - State: closed - Opened by martamatos about 5 years ago

#54 - Clean up

Pull Request - State: closed - Opened by martamatos about 5 years ago

#53 - Fix: fixed path issues for windows

Pull Request - State: closed - Opened by martamatos about 5 years ago

#52 - Docs: Updated README

Pull Request - State: closed - Opened by martamatos over 5 years ago

#50 - Collection of commits made while building putida's tca model

Pull Request - State: closed - Opened by martamatos over 5 years ago

#49 - Putida tca

Pull Request - State: closed - Opened by martamatos over 5 years ago

#48 - 6. cleanning up python code and example scripts

Pull Request - State: closed - Opened by martamatos over 5 years ago

#47 - 5. add example model

Pull Request - State: closed - Opened by martamatos over 5 years ago

#46 - 4. add try catch to any input file operation

Pull Request - State: closed - Opened by martamatos over 5 years ago

#45 - 3. Added input validation

Pull Request - State: closed - Opened by martamatos over 5 years ago

#44 - 2. Added extreme pathways test that fails (currently)

Pull Request - State: closed - Opened by martamatos over 5 years ago

#42 - Add docstrings and sphinx

Pull Request - State: closed - Opened by martamatos over 5 years ago

#41 - Added unit tests for all functions

Pull Request - State: closed - Opened by martamatos over 5 years ago

#40 - Reorganized the folder structure

Pull Request - State: closed - Opened by martamatos over 5 years ago

#39 - Met refs lp

Pull Request - State: closed - Opened by martamatos over 5 years ago

#38 - Simulation update

Pull Request - State: closed - Opened by martamatos over 5 years ago

#37 - Update readme

Pull Request - State: closed - Opened by martamatos over 5 years ago

#36 - Clean up

Pull Request - State: closed - Opened by martamatos over 5 years ago

#35 - Fixes issues with negative fluxes

Pull Request - State: closed - Opened by martamatos over 5 years ago

#34 - TMFA feasible fluxes can be different from fluxRef

Issue - State: closed - Opened by martamatos over 5 years ago - 1 comment
Labels: bug

#33 - massAction only works for 1 substrate and 1 product

Issue - State: closed - Opened by martamatos over 5 years ago - 1 comment
Labels: bug

#32 - Reactions folder is now specific for each model

Pull Request - State: closed - Opened by martamatos over 5 years ago

#31 - Fixed a few small issues

Pull Request - State: closed - Opened by martamatos over 5 years ago

#30 - Flux equations

Issue - State: closed - Opened by martamatos almost 6 years ago - 2 comments

#29 - Add the option to define enzyme ranges for MCA plot

Pull Request - State: closed - Opened by de-leeuw almost 6 years ago

#28 - Iso extreme pattern

Pull Request - State: closed - Opened by NicholasCowie almost 6 years ago

#27 - Addition of ordered TerTer mechanism pattern

Pull Request - State: closed - Opened by de-leeuw almost 6 years ago

#26 - Update python scripts

Pull Request - State: closed - Opened by martamatos almost 6 years ago

#25 - Isoenzymes

Pull Request - State: closed - Opened by NicholasCowie almost 6 years ago - 1 comment

#24 - Isoenzymes

Pull Request - State: closed - Opened by NicholasCowie almost 6 years ago

#23 - Added argument to controlAnalysis so the user can decided whether or …

Pull Request - State: closed - Opened by martamatos almost 6 years ago

#22 - when TMFA fails it spits out reaction IDs instead of numbers

Pull Request - State: closed - Opened by martamatos almost 6 years ago

#21 - Delete GRASP_input_yeast.xlsx

Pull Request - State: closed - Opened by de-leeuw almost 6 years ago

#20 - Sampling Isoenzymes

Issue - State: closed - Opened by NicholasCowie almost 6 years ago - 1 comment
Labels: question

#19 - Branch Value

Issue - State: closed - Opened by NicholasCowie almost 6 years ago - 1 comment
Labels: question

#18 - Temperature Setting

Issue - State: open - Opened by NicholasCowie almost 6 years ago - 3 comments
Labels: question

#17 - Altair rendering in visualize_controlAnalysis_matlab.ipynb

Issue - State: open - Opened by svevol almost 6 years ago
Labels: fyi

#16 - Enzyme c cs

Pull Request - State: closed - Opened by martamatos almost 6 years ago

#15 - Issues with exploring dG notebook

Issue - State: open - Opened by svevol about 6 years ago - 1 comment
Labels: fyi

#14 - freeExchange reaction mechanism not working

Issue - State: open - Opened by svevol about 6 years ago
Labels: enhancement

#13 - Specifying reaction order input

Pull Request - State: closed - Opened by NicholasCowie about 6 years ago

#12 - add metabolite balance check to check_input_file.py

Issue - State: closed - Opened by martamatos about 6 years ago - 1 comment
Labels: enhancement

#11 - Ordered bi ter

Pull Request - State: closed - Opened by NicholasCowie about 6 years ago

#10 - adding orderedBiTer reaction

Pull Request - State: closed - Opened by NicholasCowie about 6 years ago

#9 - Missing `_inhibitors` test spreadsheets

Issue - State: closed - Opened by teddygroves about 6 years ago - 3 comments
Labels: bug

#8 - Addition of ordered TerBi mechanism pattern

Pull Request - State: closed - Opened by svevol about 6 years ago

#7 - Add comment above line that doesn't work with jupyter lab

Pull Request - State: closed - Opened by teddygroves about 6 years ago - 1 comment

#6 - Notebook changes

Pull Request - State: closed - Opened by teddygroves about 6 years ago

#5 - adding Ping Pong Mechanism

Pull Request - State: closed - Opened by NicholasCowie about 6 years ago

#4 - OrderedBiUni

Pull Request - State: closed - Opened by de-leeuw about 6 years ago

#3 - Script to calculate control coefficients

Pull Request - State: closed - Opened by psaahiguera over 6 years ago

#2 - Matlab exits when running HMP1489_r1_t0

Issue - State: closed - Opened by martamatos over 6 years ago
Labels: bug

#1 - Mixed promiscuous

Pull Request - State: closed - Opened by martamatos over 6 years ago