Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / biosustain/grasp issues and pull requests
#163 - Chore(deps): Bump ipython from 8.5.0 to 8.10.0 in /visualization
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#162 - Chore(deps): Bump cryptography from 37.0.1 to 39.0.1 in /docs
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#161 - Chore(deps): Bump setuptools from 63.4.1 to 65.5.1 in /docs
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#160 - Chore(deps): Bump wheel from 0.37.1 to 0.38.1 in /docs
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#159 - Chore(deps): Bump certifi from 2022.6.15.1 to 2022.12.7 in /visualization
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#158 - Chore(deps): Bump certifi from 2022.6.15.1 to 2022.12.7 in /docs
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#157 - Chore(deps): Bump pillow from 9.2.0 to 9.3.0 in /visualization
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#156 - Chore(deps): Bump pillow from 9.2.0 to 9.3.0 in /docs
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#155 - docs: Improve tutorials section formatting
Pull Request -
State: closed - Opened by martamatos over 2 years ago
#154 - Chore(deps): Bump jupyter-server from 1.13.2 to 1.17.0 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#153 - Make tutorials more accessible
Pull Request -
State: closed - Opened by martamatos over 2 years ago
#152 - Chore(deps): Bump nbconvert from 6.4.0 to 6.5.1 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#151 - Chore(deps): Bump mistune from 0.8.4 to 2.0.3 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#150 - Chore(deps): Bump numpy from 1.21.1 to 1.22.0 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#149 - Chore(deps): Bump notebook from 6.4.7 to 6.4.12 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#148 - Chore(deps): Bump notebook from 6.4.7 to 6.4.10 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] almost 3 years ago
- 1 comment
Labels: dependencies
#147 - Chore(deps): Bump jupyter-server from 1.13.2 to 1.15.4 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] almost 3 years ago
- 1 comment
Labels: dependencies
#146 - Chore(deps): Bump pillow from 9.0.0 to 9.0.1 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies
#145 - Chore(deps): Bump pillow from 9.0.0 to 9.0.1 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies
#144 - Chore(deps): Bump ipython from 8.0.0 to 8.0.1 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies
#143 - Update simulation viz
Pull Request -
State: closed - Opened by martamatos about 3 years ago
#142 - Update documentation
Pull Request -
State: closed - Opened by martamatos about 3 years ago
#141 - Chore(deps): Bump pillow from 8.3.1 to 8.3.2 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies
#140 - Chore(deps): Bump numpy from 1.17.2 to 1.21.0 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies
#139 - Chore(deps): Bump numpy from 1.18.5 to 1.21.0 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies
#138 - Update large scale model to be based on putida
Pull Request -
State: closed - Opened by martamatos about 3 years ago
#137 - Chore(deps): Bump babel from 2.7.0 to 2.9.1 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#136 - Chore(deps): Bump notebook from 6.1.5 to 6.4.1 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#135 - Chore(deps): Bump jupyterlab from 2.1.4 to 2.2.10 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#134 - Add loop constraint to TMFA
Pull Request -
State: closed - Opened by martamatos over 3 years ago
#133 - Update sampleFluxesAndGibbsFreeEnergies.m
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
- 1 comment
#132 - Add check that vmin and vmax have the same sign
Issue -
State: open - Opened by martamatos over 3 years ago
Labels: enhancement
#131 - Update computeGibbsFreeEnergyRanges.m
Pull Request -
State: open - Opened by psaahiguera over 3 years ago
#130 - Fix A_opt definition
Pull Request -
State: closed - Opened by martamatos over 3 years ago
- 1 comment
#129 - Chore(deps): Bump urllib3 from 1.25.8 to 1.26.5 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#128 - Chore(deps): Bump urllib3 from 1.25.9 to 1.26.5 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#127 - Update tests after general sheet update
Pull Request -
State: closed - Opened by martamatos over 3 years ago
#126 - Update initialSampler.m
Pull Request -
State: open - Opened by psaahiguera over 3 years ago
- 5 comments
#125 - Update buildEnsemble.m
Pull Request -
State: open - Opened by psaahiguera over 3 years ago
- 2 comments
#124 - Update sampleGeneralReversibilities.m
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
- 3 comments
#123 - Update controlAnalysis.m
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
- 5 comments
#122 - Tutorials for the paper
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
#121 - Final tutorials
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
#120 - Update tests
Pull Request -
State: closed - Opened by martamatos over 3 years ago
#119 - Update plotControlAnalysis.m
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
#118 - Update plotControlAndResponseAnalysis.m
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
#117 - Update controlAnalysis.m
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
#116 - Update initialSampler.m
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
#115 - Update sampleFluxesAndGibbsFreeEnergies.m
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
#114 - Update checkStability.m
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
- 2 comments
#113 - Update loadEnsembleStructure.m
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
#112 - Update buildEnsemble.m
Pull Request -
State: closed - Opened by psaahiguera over 3 years ago
- 2 comments
#111 - Improve test assertions
Pull Request -
State: closed - Opened by martamatos over 3 years ago
#110 - Fix parallel mode
Pull Request -
State: closed - Opened by martamatos over 3 years ago
#109 - Chore(deps): Bump urllib3 from 1.25.6 to 1.25.8 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies
#108 - Update buildEnsemble.m
Pull Request -
State: closed - Opened by psaahiguera almost 4 years ago
#107 - Update sampleFluxesAndGibbsFreeEnergies.m
Pull Request -
State: closed - Opened by psaahiguera almost 4 years ago
#106 - Chore(deps): Bump pygments from 2.4.2 to 2.7.4 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies
#105 - Chore(deps): Bump jinja2 from 2.10.3 to 2.11.3 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies
#104 - Chore(deps): Bump notebook from 6.0.3 to 6.1.5 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies
#103 - Chore(deps): Bump pygments from 2.6.1 to 2.7.4 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies
#102 - Chore(deps): Bump jinja2 from 2.11.2 to 2.11.3 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies
#101 - Chore(deps): Bump bleach from 3.1.5 to 3.3.0 in /visualization
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies
#100 - chore: Add error message to buildKineticFxn
Pull Request -
State: closed - Opened by martamatos almost 4 years ago
#99 - Update initialSampler.m
Pull Request -
State: closed - Opened by psaahiguera almost 4 years ago
- 1 comment
#98 - Removed splitRatios from input files and loadEnsembleStructure
Pull Request -
State: closed - Opened by de-leeuw almost 4 years ago
- 2 comments
#97 - Remove measuredMets
Pull Request -
State: closed - Opened by martamatos almost 4 years ago
#96 - Small fixes
Pull Request -
State: closed - Opened by martamatos about 4 years ago
#95 - dGf based TMFA implemented along with fixes/updates
Pull Request -
State: closed - Opened by martamatos about 4 years ago
#94 - Add check for K lower limit in TMFA
Pull Request -
State: closed - Opened by martamatos about 4 years ago
#93 - test: Set correct numConditions and update tests
Pull Request -
State: closed - Opened by martamatos about 4 years ago
#92 - Fix jacobian calculation for ABC
Pull Request -
State: closed - Opened by martamatos about 4 years ago
#91 - Readd linprog
Pull Request -
State: closed - Opened by martamatos about 4 years ago
#90 - Update controlAndResponseAnalysis.m
Pull Request -
State: closed - Opened by de-leeuw about 4 years ago
#89 - Update excel sheet
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#88 - Tims model
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#87 - Update controlAnalysis.m
Pull Request -
State: closed - Opened by de-leeuw over 4 years ago
- 2 comments
#86 - ensemble.metsActive definition for more than two conditions may be problematic
Issue -
State: closed - Opened by timmccubbin over 4 years ago
- 1 comment
Labels: bug
#85 - Added license file
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#84 - Update docs
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#83 - Just so ABC works for Tim :)
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#82 - Implemented thermodynamically feasible TMFA + Gibbs energy sampling
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#81 - Removed dependency on the column "modelled?" in the rxns excel sheet
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#80 - Removed dependency on the columns "active" and "constant" in the mets excel sheet
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#79 - Tests: fixed exportSBML test
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#78 - Tests: Added missing test files + updated tests
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#77 - Added linprog support
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#76 - Simulation viz
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#75 - Added function to export model to SBML
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#74 - Updated tests for calculateMMCurves
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#73 - Simulate ensemble now supports perturbations to fixed metabolites
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#72 - Feat: fixedMets can now be perturbed in simulateEnsemble
Pull Request -
State: closed - Opened by martamatos over 4 years ago
#71 - Remove spaces from model name
Issue -
State: open - Opened by martamatos almost 5 years ago
Labels: enhancement
#70 - Fix: fixed error messages when opening non existing files
Pull Request -
State: closed - Opened by martamatos almost 5 years ago
#69 - Fixes in calculate MM curves
Pull Request -
State: closed - Opened by martamatos almost 5 years ago
#68 - Const mets
Pull Request -
State: closed - Opened by martamatos almost 5 years ago
#67 - Update error messages
Pull Request -
State: closed - Opened by martamatos almost 5 years ago
#66 - General updates to calculatemMCurves
Pull Request -
State: closed - Opened by martamatos almost 5 years ago
#65 - Fix simulate ensemble
Pull Request -
State: closed - Opened by martamatos about 5 years ago
#64 - Fix: updated units from micromol to mmol on calculateMMCurves
Pull Request -
State: closed - Opened by martamatos about 5 years ago