Ecosyste.ms: Issues

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GitHub / biosustain/gnomic issues and pull requests

#31 - Replace "-" with "^" to signify deletions

Issue - State: open - Opened by lyschoening over 6 years ago

#30 - Ensure presence declarations are handled properly

Issue - State: closed - Opened by lyschoening over 7 years ago

#29 - a>{b c}:a not working in v1

Issue - State: closed - Opened by lyschoening over 7 years ago
Labels: bug

#28 - Feat/add flake8

Pull Request - State: closed - Opened by Melanie-M over 7 years ago - 1 comment

#27 - Single nucleotide deletion not working

Issue - State: closed - Opened by lyschoening over 7 years ago - 2 comments
Labels: bug

#26 - Add flake8

Issue - State: closed - Opened by lyschoening over 7 years ago

#25 - Feat/add svn

Pull Request - State: closed - Opened by Melanie-M over 7 years ago

#23 - Parsing 'None' gives obscure error

Issue - State: closed - Opened by Melanie-M over 7 years ago - 1 comment

#22 - Support parsing genotype changes with spaces

Issue - State: closed - Opened by lyschoening over 7 years ago - 1 comment

#21 - Rewrite formatting and other functions for version 1.0

Issue - State: closed - Opened by lyschoening over 7 years ago

#20 - Refactor for version 1.0

Issue - State: closed - Opened by lyschoening over 7 years ago

#19 - Feat/html format

Pull Request - State: closed - Opened by Melanie-M over 7 years ago

#18 - Implement HTML format output

Issue - State: closed - Opened by lyschoening over 7 years ago

#17 - fix: append accession after variant

Pull Request - State: closed - Opened by phantomas1234 over 7 years ago

#16 - fix: add type and fix reaction position in genotype_to_(string/text)

Pull Request - State: closed - Opened by phantomas1234 almost 8 years ago

#15 - feat: let genotype_to_(text/string) return accession information

Pull Request - State: closed - Opened by phantomas1234 almost 8 years ago

#14 - change_to_text() on plasmid with marker adds plasmid itself as marker

Issue - State: closed - Opened by lyschoening almost 8 years ago
Labels: bug

#13 - fix: travis-ci badge after renaming to gnomic

Pull Request - State: closed - Opened by phantomas1234 almost 8 years ago

#12 - genotype_to_string and genotype_to_text failure

Issue - State: closed - Opened by phantomas1234 almost 8 years ago - 5 comments
Labels: bug

#11 - Cannot parse gnomic generated string

Issue - State: closed - Opened by the-code-magician almost 8 years ago

#10 - Add flag warning when a substitution is ambiguous

Issue - State: closed - Opened by lyschoening about 8 years ago

#9 - Full documentation of the language and behavior

Issue - State: open - Opened by lyschoening about 8 years ago

#4 - Ranges not being rendered in Genotype.format()

Issue - State: closed - Opened by lyschoening about 8 years ago

#3 - feat/genotype_to_text

Pull Request - State: closed - Opened by warlink about 8 years ago

#2 - Feat/multiple markers

Pull Request - State: closed - Opened by maciejkorzepa about 8 years ago

#1 - Phylogenetic tree generation from genotypes

Issue - State: open - Opened by lyschoening about 9 years ago