Ecosyste.ms: Issues

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GitHub / biopragmatics/curies issues and pull requests

#127 - New updates detected with Cruft

Pull Request - State: open - Opened by github-actions[bot] 19 days ago

#126 - Reject new updates detected with Cruft

Pull Request - State: open - Opened by github-actions[bot] 19 days ago

#125 - Reject new updates detected with Cruft

Pull Request - State: open - Opened by github-actions[bot] 26 days ago

#124 - New updates detected with Cruft

Pull Request - State: open - Opened by github-actions[bot] 26 days ago

#123 - Remove dependency on requests

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#122 - Add test for set membership of references

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#121 - Parse simplification

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#120 - Enable sorting references

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#119 - Refactor splitting code

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#118 - Implement named references

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#117 - Update with cookiecutter-snekpack

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#116 - Update packaging

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#115 - Stop supporting Pydantic v1

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#114 - Remove support for py38

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#113 - Drop Pydantic v1 support

Issue - State: closed - Opened by cthoyt 5 months ago

#112 - Make field validators classmethods

Pull Request - State: closed - Opened by sneakers-the-rat 5 months ago - 1 comment

#111 - pydantic `field_validator`s should be `@classmethod`s

Issue - State: closed - Opened by sneakers-the-rat 5 months ago - 2 comments

#110 - Add tests for remapping

Pull Request - State: open - Opened by cthoyt 7 months ago

#109 - Add JSON schema for extended prefix map

Pull Request - State: closed - Opened by cthoyt 7 months ago - 1 comment

#108 - use model_config when pydantic v2

Pull Request - State: closed - Opened by sneakers-the-rat 8 months ago - 2 comments

#107 - Add TSV writer and update other writers' docs

Pull Request - State: closed - Opened by cthoyt 9 months ago

#106 - Exporters to support Monarch use cases

Issue - State: closed - Opened by joeflack4 9 months ago - 3 comments

#104 - Add option for checking w3c specification on `expand()`

Pull Request - State: open - Opened by cthoyt 9 months ago

#102 - Bump pydantic

Pull Request - State: closed - Opened by hrshdhgd 10 months ago

#101 - Improve Pydantic v1/2 cross-compatibility

Pull Request - State: closed - Opened by hrshdhgd 10 months ago - 6 comments

#99 - Upgrading (non-bijective) prefix maps

Pull Request - State: closed - Opened by cthoyt 11 months ago

#98 - Add documentation describing all builtin converters

Pull Request - State: closed - Opened by cthoyt 12 months ago

#97 - Improve baked in converter docs

Issue - State: open - Opened by cthoyt 12 months ago

#96 - `Converter.prefixmap` should be a bimap

Issue - State: closed - Opened by matentzn about 1 year ago - 4 comments

#94 - Add FastAPI list of records docs

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#93 - Add discovery algorithm

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#92 - Implement URI or CURIE functionality

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#91 - Working with fields that might be URI or CURIE

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#90 - Add is_curie and is_uri functions

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#89 - Add is_curie() and is_uri() methods as helper functions

Issue - State: closed - Opened by matentzn about 1 year ago - 4 comments

#88 - Fix typo `get_obofoundry_converter`

Pull Request - State: closed - Opened by matentzn about 1 year ago - 1 comment

#87 - Reconciliation based on synonym doesn't work as expected

Issue - State: open - Opened by cthoyt about 1 year ago
Labels: bug

#86 - Handle keywords and empty strings in JSON-LD

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#85 - Improve JSON-LD and SHACL export

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#84 - Add more detailed typing to SHACL writer

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#83 - Add regexes to records

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#82 - Add logging to reconciliation

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#81 - Add IO functions

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#80 - Add options for strict and passthrough to standardization

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#79 - Add additional options to compress and expand

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#78 - Enable transitive reconciliaton

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#77 - URI/CURIE disambiguation

Issue - State: closed - Opened by Silvanoc about 1 year ago - 7 comments

#76 - Additional reconciliation docs

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#75 - Prefix reconciliation with transitive mappings

Issue - State: closed - Opened by cthoyt about 1 year ago

#74 - Add prefix reconciliation operations

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#73 - Hashing an EPM

Issue - State: open - Opened by cthoyt about 1 year ago

#71 - Improve configurability and documentation of Pandas utilities

Pull Request - State: open - Opened by cthoyt about 1 year ago - 1 comment

#70 - Add model for list of records

Issue - State: closed - Opened by cthoyt about 1 year ago

#69 - Make header parsing more reusable

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#68 - Reorganize and improve documentation

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#67 - Add subsetting functionality

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#66 - Fix chain implementation and improve docs

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#65 - Remove Bioregistry from testing

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#64 - Make explicit cross-version support for Pydantic

Pull Request - State: closed - Opened by cmungall over 1 year ago - 6 comments

#62 - Reorganize documentation

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#61 - Improve JSON-LD context parsing

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#60 - Add strict expansion and contraction functions

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#59 - Drop Python 3.7 support

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#58 - Add reference datatypes and switch to pydantic

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#57 - Add functions for standardizing content in pandas DataFrames

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#56 - Housekeeping

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#55 - Refactor mapping service utils

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#54 - Add explicit delimiters in web routes

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#52 - Tests for remote federated services

Issue - State: open - Opened by cthoyt over 1 year ago - 1 comment

#51 - Improve testing

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#50 - Update header handling

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#49 - Add tests against local Blazegraph

Pull Request - State: closed - Opened by vemonet over 1 year ago - 2 comments

#48 - Handle fully specified triples in mapping service

Issue - State: open - Opened by cthoyt over 1 year ago

#47 - Add tests for response content types

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#46 - Better handling of content types

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#45 - Add valid URI checks in mapping service graph

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#44 - Add CLI for mapper service

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#43 - Improve configurability and documentation of mapping service

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#42 - Example of how a normal rdf graph (i.e. the bioregistry rdf) could be…

Pull Request - State: closed - Opened by JervenBolleman over 1 year ago - 3 comments

#41 - Implement an identifier mapping service

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 21 comments

#40 - Add functionality for generating all possible IRIs

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#39 - Add prefix standardization and record lookup

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#38 - Implement URI standardization

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#37 - Add functionality for standardizing CURIEs

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#36 - Add RDFLib functionality

Pull Request - State: closed - Opened by cthoyt almost 2 years ago - 1 comment

#35 - Identify places that could be using `curies`

Issue - State: closed - Opened by cthoyt almost 2 years ago

#34 - Add incremental converter builder

Pull Request - State: closed - Opened by cthoyt almost 2 years ago - 3 comments

#33 - Public API to build a converter incrementally

Issue - State: closed - Opened by kervel almost 2 years ago - 1 comment

#32 - Remove deprecated URL getter functions and improve docs

Pull Request - State: closed - Opened by cthoyt almost 2 years ago - 1 comment

#31 - Add tutorial for running CLI

Pull Request - State: closed - Opened by cthoyt almost 2 years ago

#30 - Add converter CLI

Pull Request - State: closed - Opened by cthoyt almost 2 years ago - 1 comment

#29 - Update factory interfaces for directly loading from path or URL

Pull Request - State: closed - Opened by cthoyt almost 2 years ago - 1 comment

#28 - Add omni-decorator

Pull Request - State: closed - Opened by cthoyt almost 2 years ago - 1 comment

#27 - Update documentation and configurability of web app generation

Pull Request - State: closed - Opened by cthoyt almost 2 years ago - 1 comment

#26 - Add app builders

Pull Request - State: closed - Opened by cthoyt almost 2 years ago - 1 comment