Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / bionumpy/bionumpy issues and pull requests
#81 - Unable to run test_bamquality() function on bam files of nanopore reads generated by minimap2
Issue -
State: closed - Opened by rhondene 3 months ago
- 6 comments
#80 - A "get_interval_sequences" for other file types?
Issue -
State: open - Opened by MiqG 4 months ago
- 4 comments
#79 - Is it possible to memmap RaggedArrays (or otherwise achieve random access without loading the entire array in memory)?
Issue -
State: open - Opened by yangkky 4 months ago
- 2 comments
Labels: enhancement
#78 - feature: support fna and faa and give better feedback on missing file…
Pull Request -
State: closed - Opened by knutdrand 6 months ago
#77 - support for the fna file extension
Issue -
State: closed - Opened by nick-youngblut 6 months ago
- 2 comments
#76 - Reading custom tags in BAM file
Issue -
State: open - Opened by ikramu 7 months ago
- 2 comments
Labels: enhancement
#69 - TST: some testing infrastructure issues/suggestions
Issue -
State: closed - Opened by tylerjereddy 11 months ago
- 3 comments
#68 - MAINT: warning on import
Issue -
State: closed - Opened by tylerjereddy 11 months ago
- 1 comment
#67 - DOC: supported file format duplication
Issue -
State: closed - Opened by tylerjereddy 11 months ago
- 1 comment
#63 - Dev #major version bump
Pull Request -
State: closed - Opened by ivargr about 1 year ago
#57 - line breaks and carriage returns in plaintext (non-compressed) FASTQ are not stripped off
Issue -
State: closed - Opened by yk23 over 1 year ago
- 2 comments
Labels: bug
#45 - Parse vcf header
Pull Request -
State: closed - Opened by dn070017 almost 2 years ago
#41 - typo (Geting)
Pull Request -
State: closed - Opened by telatin about 2 years ago
#40 - fix: Project link on pypi
Pull Request -
State: closed - Opened by telatin about 2 years ago
#39 - Add to conda
Issue -
State: closed - Opened by jsgounot about 2 years ago
- 4 comments
#36 - Subsetting intervals
Issue -
State: closed - Opened by dawe about 2 years ago
- 2 comments
#35 - Instantiating Intervals from dataframes/numpy arrays
Issue -
State: closed - Opened by dawe about 2 years ago
- 2 comments
#33 - Readme fix
Pull Request -
State: closed - Opened by ivargr about 2 years ago
#30 - Write floats to file
Issue -
State: closed - Opened by pavlovicmilena about 2 years ago
- 1 comment
#29 - Writing empty data to file throws exception
Issue -
State: closed - Opened by ivargr about 2 years ago
- 1 comment
Labels: bug
#25 - Pypi fix
Pull Request -
State: closed - Opened by ivargr about 2 years ago
#24 - Merging dev into master
Pull Request -
State: closed - Opened by ivargr about 2 years ago
#23 - Dev (to get documentation update with newest developer guide live)
Pull Request -
State: closed - Opened by ivargr about 2 years ago
#21 - Error when encoding a list of empty strings
Issue -
State: closed - Opened by pavlovicmilena over 2 years ago
#20 - Gc content inside genes documentation example
Pull Request -
State: closed - Opened by sandve over 2 years ago
#19 - Printing a streamable changes its state
Issue -
State: closed - Opened by sandve over 2 years ago
- 2 comments
Labels: bug
#18 - Add possibility to work with a concept aka GlobalGenomeOffset?
Issue -
State: closed - Opened by sandve over 2 years ago
- 1 comment
Labels: enhancement
#17 - Raise human readable exception on format errors
Issue -
State: closed - Opened by sandve over 2 years ago
- 9 comments
#16 - Add documentation on how to use RunLengthArray
Issue -
State: closed - Opened by sandve over 2 years ago
- 1 comment
Labels: documentation
#15 - Define an explicit strategy for how to help users discover central functions for bionumpy objects they are working with
Issue -
State: closed - Opened by sandve over 2 years ago
- 1 comment
Labels: documentation, enhancement
#14 - add close() to NumpyFileReader
Pull Request -
State: closed - Opened by pavlovicmilena over 2 years ago
#13 - file closing
Issue -
State: closed - Opened by KanduriC over 2 years ago
- 5 comments
#12 - The concept of an interval might currently be a bit unclear to users
Issue -
State: closed - Opened by sandve over 2 years ago
- 2 comments
#11 - ValueError when trying to write intervals to file
Issue -
State: closed - Opened by sandve over 2 years ago
- 10 comments
#10 - Documentation should have an entry on how to write out bionumpy data to files
Issue -
State: closed - Opened by sandve over 2 years ago
- 2 comments
Labels: documentation
#9 - Behavior of merge_intervals
Issue -
State: closed - Opened by sandve over 2 years ago
- 1 comment
#8 - Link to documentation from main github page does not work
Issue -
State: closed - Opened by sandve over 2 years ago
#7 - Bug in str for NpDataclassStream
Issue -
State: closed - Opened by sandve over 2 years ago
#4 - Cupy testing
Pull Request -
State: closed - Opened by jorgenwh over 2 years ago
#3 - Switch to as_encoded_sequence_array in StringMatcher
Pull Request -
State: closed - Opened by pavlovicmilena over 2 years ago
#2 - add func args to __exit__ of NpDataclassReader
Pull Request -
State: closed - Opened by pavlovicmilena over 2 years ago
#1 - Merging knutdrand/bionumpy into uio-bmi
Pull Request -
State: closed - Opened by ivargr over 2 years ago