bionode/bionode-watermill issues and pull requests

#95 - Handle External Inputs

Issue - State: open - Opened by thejmazz over 6 years ago

#94 - Workflow-status

Pull Request - State: closed - Opened by evoxtorm over 6 years ago - 1 comment

#93 - fix-uncaught-error-process-exits

Pull Request - State: closed - Opened by evoxtorm over 6 years ago - 2 comments

#92 - fix-uncaught-error-process-exits

Pull Request - State: closed - Opened by evoxtorm over 6 years ago - 3 comments

#91 - fix-uncaught-error-process-exits

Pull Request - State: closed - Opened by evoxtorm over 6 years ago - 2 comments

#90 - remove paramsString from trajectory

Pull Request - State: closed - Opened by thejmazz about 7 years ago

#89 - Inline Scripts

Issue - State: open - Opened by thejmazz about 7 years ago - 1 comment

#88 - Pipe task stdout/stderr to file

Issue - State: open - Opened by thejmazz about 7 years ago
Labels: feature, in progress

#87 - Add insight dependency to anonymously report usage metrics

Issue - State: open - Opened by bmpvieira about 7 years ago
Labels: enhancement

#86 - Change on the behavior of d3 visualization

Pull Request - State: closed - Opened by tiagofilipe12 about 7 years ago - 2 comments
Labels: ux, documentation

#85 - Docs update - fixing syntax errors

Pull Request - State: closed - Opened by tiagofilipe12 about 7 years ago - 1 comment
Labels: documentation

#84 - Docs update

Pull Request - State: closed - Opened by tiagofilipe12 about 7 years ago - 1 comment
Labels: documentation

#83 - Merge Develop into Master in preparation for 1.0.0

Pull Request - State: closed - Opened by thejmazz about 7 years ago - 1 comment
Labels: enhancement

#82 - Execution of a pipeline following other pipeline

Issue - State: open - Opened by tiagofilipe12 about 7 years ago
Labels: discussion

#81 - Through tasks not properly logging

Issue - State: open - Opened by tiagofilipe12 about 7 years ago
Labels: discussion

#80 - Improve validators over input/output files

Issue - State: open - Opened by tiagofilipe12 about 7 years ago - 1 comment
Labels: discussion, feature

#79 - Streaming Between Tasks

Issue - State: open - Opened by thejmazz about 7 years ago - 1 comment
Labels: discussion, feature

#78 - Tasks as npm modules

Issue - State: open - Opened by tiagofilipe12 over 7 years ago - 1 comment
Labels: discussion

#77 - Improvements to visualization tool

Issue - State: open - Opened by tiagofilipe12 over 7 years ago
Labels: enhancement

#76 - Docs update

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 3 comments
Labels: documentation

#75 - Refactor task definition

Issue - State: open - Opened by tiagofilipe12 over 7 years ago - 3 comments
Labels: refactor

#74 - Refactor pipeline parsing

Issue - State: open - Opened by tiagofilipe12 over 7 years ago - 2 comments
Labels: refactor

#73 - Add another test for fork within fork wrapped in join

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 4 comments
Labels: test

#72 - Going deeper on fork orchestration

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 5 comments
Labels: enhancement

#71 - Orchestrators tests

Pull Request - State: closed - Opened by thejmazz over 7 years ago - 1 comment
Labels: test

#70 - Orchestrators refactoring and fork handling other orchestrators

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 4 comments
Labels: refactor

#69 - added task.name to uid generator

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 6 comments
Labels: bug

#68 - [Snyk] Fix for 1 vulnerable dependency path

Pull Request - State: closed - Opened by snyk-bot over 7 years ago
Labels: security

#67 - edits to two-mappers pipeline and removed of redundant defaultTask

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago
Labels: enhancement

#66 - "task binding" without hardcoded file suffixes

Issue - State: open - Opened by thejmazz over 7 years ago - 1 comment
Labels: discussion

#65 - Multiple inputs for a task

Issue - State: open - Opened by tiagofilipe12 over 7 years ago - 1 comment
Labels: enhancement

#64 - Added operation command to graphson

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago
Labels: enhancement

#63 - Add support for cluster computing

Issue - State: open - Opened by tiagofilipe12 over 7 years ago
Labels: enhancement, feature

#62 - Implemented a graph visualization

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago
Labels: feature

#61 - implemented redux-logger given an environmental variable

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 1 comment
Labels: enhancement

#60 - Graph file

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 3 comments
Labels: enhancement

#59 - Transfered experimental branch for development of graph

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago
Labels: enhancement

#58 - Fixed issue with logging of task name to stdout

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 2 comments
Labels: bug

#57 - Summary file

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 4 comments
Labels: enhancement

#56 - Updated docker related links and added link to tutorial in README

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 4 comments
Labels: documentation

#55 - Added a tutorial on how to run "two-mappers" example

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 1 comment
Labels: documentation

#54 - add license type

Issue - State: closed - Opened by tiagofilipe12 over 7 years ago - 1 comment
Labels: legal

#53 - Adds a new example pipeline and edits existing example pipeline

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 5 comments
Labels: examples

#52 - Create CODE_OF_CONDUCT.md

Pull Request - State: closed - Opened by ayangromano over 7 years ago - 1 comment
Labels: community, mozsprint

#51 - Check if file is empty

Issue - State: closed - Opened by tiagofilipe12 over 7 years ago - 3 comments
Labels: bug, mozsprint

#50 - Pipeline Graph (DAG) Visualization

Issue - State: closed - Opened by thejmazz over 7 years ago - 4 comments
Labels: feature, mozsprint

#49 - Simple usage tutorial

Issue - State: open - Opened by tiagofilipe12 over 7 years ago - 2 comments
Labels: documentation, mozsprint

#48 - correct path to home folder

Pull Request - State: closed - Opened by tiagofilipe12 over 7 years ago - 1 comment
Labels: bug

#47 - How can be a pipeline extended to deal with multiple samples?

Issue - State: closed - Opened by zhangzhen over 7 years ago - 3 comments
Labels: question, mozsprint

#46 - Integrate nodestream

Issue - State: open - Opened by thejmazz over 7 years ago - 2 comments
Labels: discussion, mozsprint

#45 - Common Workflow Language (CWL) support?

Issue - State: open - Opened by olgabot about 8 years ago - 5 comments
Labels: discussion, CWL, mozsprint

#44 - flag to allow input resolution to fallback to cwd

Issue - State: open - Opened by thejmazz about 8 years ago - 1 comment
Labels: enhancement

#43 - better logs when input is not resolved

Issue - State: open - Opened by thejmazz about 8 years ago
Labels: enhancement

#42 - Custom file validator over output object

Issue - State: open - Opened by thejmazz over 8 years ago
Labels: feature

#41 - Catch Operation Finish

Issue - State: closed - Opened by thejmazz over 8 years ago - 2 comments
Labels: feature

#40 - v0.2.x

Issue - State: closed - Opened by thejmazz over 8 years ago - 2 comments
Labels: discussion

#39 - json schema validator on input, output, action stream

Issue - State: open - Opened by thejmazz over 8 years ago - 1 comment
Labels: enhancement, validators

#38 - Port task into redux actions

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: enhancement

#37 - Trinity Pipeline

Issue - State: open - Opened by thejmazz over 8 years ago
Labels: examples

#36 - Parallelize BAM chunks

Issue - State: open - Opened by thejmazz over 8 years ago - 1 comment
Labels: examples

#35 - Resolve input from all tasks in join

Issue - State: closed - Opened by thejmazz over 8 years ago - 3 comments
Labels: feature

#34 - Improve resolution of passed input

Issue - State: closed - Opened by thejmazz over 8 years ago - 1 comment
Labels: enhancement

#33 - { value: foo } type to just foo

Issue - State: closed - Opened by thejmazz over 8 years ago - 1 comment
Labels: refactor

#32 - integrate once where applicable

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: refactor

#31 - Basic CLI

Issue - State: open - Opened by thejmazz over 8 years ago - 2 comments
Labels: feature

#30 - Example Pipelines

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: enhancement, epic

#29 - Advanced genomic vcf workflow

Issue - State: open - Opened by thejmazz over 8 years ago
Labels: enhancement

#28 - Basic genomic vcf workflow

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: discussion

#27 - Test Reentrancy

Issue - State: open - Opened by thejmazz over 8 years ago
Labels: test

#26 - tee stream to file

Issue - State: open - Opened by thejmazz over 8 years ago
Labels: feature

#25 - resume option globally and per task

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: enhancement

#24 - force rerun of all/specific task

Issue - State: closed - Opened by thejmazz over 8 years ago - 1 comment
Labels: enhancement

#23 - file timestamp or checksum

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: feature

#22 - File Validation

Issue - State: closed - Opened by thejmazz over 8 years ago - 1 comment
Labels: epic, feature

#21 - pass in custom validator functions

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: feature

#20 - null check validation

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: feature

#19 - file existence validation

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: feature

#18 - Unit tests for task orchestration

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: test

#17 - stream search results, filter down to IDs, run pipeline on each ID

Issue - State: open - Opened by thejmazz over 8 years ago
Labels: examples

#16 - complex join, parallels, forking

Issue - State: closed - Opened by thejmazz over 8 years ago - 2 comments
Labels: test

#15 - transform task

Issue - State: open - Opened by thejmazz over 8 years ago
Labels: test

#14 - simple forking

Issue - State: closed - Opened by thejmazz over 8 years ago - 1 comment
Labels: test

#13 - joins and parallels composability

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: test

#12 - simple parallels

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: test

#11 - simple joins

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: test

#10 - resolution scenarios (previous task vs fs)

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: test

#9 - Check if outputted file is not null by default

Issue - State: closed - Opened by thejmazz over 8 years ago - 1 comment
Labels: feature

#8 - Generalize traverse for resolving functions

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: enhancement

#7 - Types

Issue - State: closed - Opened by thejmazz over 8 years ago - 3 comments
Labels: discussion

#6 - Refactor out custom classes into vanilla objs

Issue - State: closed - Opened by thejmazz over 8 years ago - 1 comment
Labels: enhancement

#5 - Passing output from last task into new task

Issue - State: closed - Opened by thejmazz over 8 years ago - 4 comments
Labels: discussion

#4 - Async vs Sync Task creation

Issue - State: closed - Opened by thejmazz over 8 years ago - 2 comments
Labels: discussion

#3 - Prevent Interference with Task Streams

Issue - State: closed - Opened by thejmazz over 8 years ago
Labels: feature

#2 - Timeline

Issue - State: closed - Opened by thejmazz over 8 years ago - 3 comments
Labels: discussion

#1 - Task Architecture

Issue - State: closed - Opened by thejmazz over 8 years ago - 5 comments
Labels: discussion

GitHub / bionode/bionode-watermill issues and pull requests