Ecosyste.ms: Issues

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GitHub / biona001/ghostknockoffgwas issues and pull requests

#39 - Docs for v0.2.3

Pull Request - State: closed - Opened by biona001 21 days ago - 1 comment

#38 - Memory efficiency in `estimate_sigma`

Pull Request - State: closed - Opened by biona001 26 days ago

#37 - Estimate LD based on Pan-UKB routine

Pull Request - State: closed - Opened by biona001 29 days ago - 1 comment

#36 - "small" binary

Issue - State: open - Opened by biona001 3 months ago - 1 comment

#35 - Improve LD shrinkage efficiency

Pull Request - State: closed - Opened by biona001 4 months ago - 2 comments

#34 - update download links in doc to v0.2.2

Pull Request - State: closed - Opened by biona001 4 months ago

#32 - Fix infinite loop in unit tests

Pull Request - State: closed - Opened by biona001 4 months ago - 1 comment

#31 - Fix CI

Pull Request - State: closed - Opened by biona001 4 months ago

#30 - fix CI

Pull Request - State: closed - Opened by biona001 4 months ago

#29 - PLINK support

Pull Request - State: closed - Opened by biona001 4 months ago

#28 - Custom Reference Panel in PLINK Format

Issue - State: closed - Opened by AFSHINJAM 5 months ago - 3 comments

#27 - Tutorial for `solveblock`

Issue - State: open - Opened by biona001 5 months ago

#26 - ERROR: id is missing

Issue - State: closed - Opened by biona001 5 months ago

#25 - consider the case when VCF file contain multiple chr

Pull Request - State: closed - Opened by biona001 5 months ago

#24 - Chech chr

Pull Request - State: closed - Opened by biona001 5 months ago - 1 comment

#23 - Explicitly check `CHROM` field is Int

Issue - State: closed - Opened by biona001 5 months ago

#22 - `manhattan.R` does not work on output of `solveblock`

Issue - State: closed - Opened by biona001 5 months ago

#21 - Optimize VCF reading time

Issue - State: open - Opened by biona001 5 months ago
Labels: enhancement

#20 - `solveblock`: matrix contains Infs or NaNs

Issue - State: closed - Opened by biona001 5 months ago

#18 - Roadmap for v0.2.0 release

Issue - State: closed - Opened by biona001 5 months ago - 1 comment

#17 - Using your method with our data

Issue - State: open - Opened by Ennazhou 5 months ago - 6 comments

#16 - Set `random-shuffle=false` by default

Issue - State: closed - Opened by biona001 5 months ago

#15 - Docs for `solve_blocks()`

Issue - State: closed - Opened by biona001 5 months ago
Labels: documentation

#14 - Improve coverage

Issue - State: closed - Opened by biona001 5 months ago

#13 - Export `solve_blocks` for creating `.h5` formatted LD files

Pull Request - State: closed - Opened by biona001 5 months ago

#12 - VCF: run `solve_blocks()` on typed SNPs only

Issue - State: open - Opened by biona001 5 months ago
Labels: enhancement

#11 - Parse LD files with either hg19 or hg38, but not both

Issue - State: closed - Opened by biona001 5 months ago
Labels: enhancement

#10 - Drop JLD2.jl in favor of forked HDF5.jl

Pull Request - State: closed - Opened by biona001 8 months ago - 1 comment

#9 - wget `example_zfile.txt` broken

Issue - State: closed - Opened by biona001 8 months ago

#8 - Error in CMplot

Issue - State: closed - Opened by biona001 8 months ago

#7 - FileIO error

Issue - State: closed - Opened by biona001 9 months ago - 2 comments

#5 - very slow manhattan plots

Issue - State: closed - Opened by biona001 9 months ago - 1 comment

#4 - Non-linux support?

Issue - State: open - Opened by biona001 9 months ago

#3 - Improve documentation

Issue - State: open - Opened by biona001 9 months ago

#2 - Within group knockoff filter

Pull Request - State: closed - Opened by biona001 9 months ago - 1 comment

#1 - Roadmap until 1.0 release

Issue - State: closed - Opened by biona001 10 months ago