Ecosyste.ms: Issues

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GitHub / biomodhub/biomod2 issues and pull requests

#321 - How to export Geotif?

Issue - State: closed - Opened by mula-jpg about 1 year ago - 1 comment
Labels: help wanted

#320 - Why the response curve of categorical variables become continuous?

Issue - State: closed - Opened by mula-jpg about 1 year ago - 5 comments
Labels: help wanted

#319 - Error in BIOMOD_4.2-4- bm_PlotEvalMean returns "Error in names(x) <- value : ..."

Issue - State: closed - Opened by silveiratcl about 1 year ago - 7 comments
Labels: bug

#318 - independent evaluation dataset for cross validate the ensemble models.

Issue - State: closed - Opened by Samyar1400 about 1 year ago - 1 comment
Labels: help wanted

#316 - Categorical variables - variable importance analysis

Issue - State: closed - Opened by ellalewi547 about 1 year ago - 6 comments
Labels: help wanted

#314 - help with em.by

Issue - State: closed - Opened by LindeNozomiLeo about 1 year ago - 1 comment

#313 - MaxEnt Java Compatibility Issue when Projecting onto Past Climatic Data with BIOMOD_EnsembleForcasting()

Issue - State: closed - Opened by MoHa1611 about 1 year ago - 1 comment
Labels: help wanted

#311 - Error in BIOMOD_ModelingOptions - fail to change the parameter of the biomod2 inner model (RF)

Issue - State: closed - Opened by Jinyu8579 about 1 year ago - 4 comments
Labels: bug

#310 - ensemble modeling output plot gave inverse values but with accurate projection on map

Issue - State: closed - Opened by sandeepB055 about 1 year ago - 6 comments
Labels: modeling question

#309 - Error in BIOMOD_Projection - server seemed not running with no output

Issue - State: closed - Opened by DanileLiu about 1 year ago - 3 comments
Labels: bug

#308 - How is the Ensemble modeling evaluation calculated ?

Issue - State: closed - Opened by FannyThiery about 1 year ago - 5 comments
Labels: modeling question

#307 - How can I get TSS, ROC, KAPPA for calibration validation in BIOMOD_EnsembleModeling function?

Issue - State: closed - Opened by Samyar1400 about 1 year ago - 3 comments
Labels: help wanted

#306 - BIOMOD_FormatingData gave Error: std::bad_alloc.

Issue - State: closed - Opened by sandeepB055 about 1 year ago - 8 comments
Labels: bug

#305 - Help with get_formal_model - Summary of GLM Model Output

Issue - State: closed - Opened by GitBen01 about 1 year ago - 1 comment
Labels: help wanted

#304 - Help with study case - Low evaluation scores

Issue - State: closed - Opened by MayaGueguen about 1 year ago - 6 comments
Labels: modeling question

#303 - Improvement for BIOMOD_ModellingOptions - deactivation of thresholds for feature classes in MAXENT

Issue - State: closed - Opened by Xinhang-Lee about 1 year ago - 1 comment
Labels: enhancement, outdated

#302 - Cannot plot Response Curve for MAXENT outputs

Issue - State: closed - Opened by CatherineBuckland about 1 year ago - 4 comments
Labels: bug, help wanted

#301 - ME.env argument of the function BIOMOD_Tuning is never used

Issue - State: closed - Opened by cedricbriandgithub about 1 year ago - 1 comment
Labels: devel

#300 - Help with BIOMOD_modelling - [How to get p-value from GLM]

Issue - State: closed - Opened by GitBen01 about 1 year ago - 1 comment
Labels: help wanted

#299 - Error with MAXENT in BIOMOD_Modeling - task failed "cannot open the connection"

Issue - State: closed - Opened by rpatin about 1 year ago - 1 comment
Labels: bug, outdated

#298 - Help with BIOMOD - how to compute spatial autocorrelation

Issue - State: closed - Opened by GitBen01 about 1 year ago - 1 comment
Labels: help wanted, outdated

#297 - RF downsample with k-fold spatial block cross-validation

Issue - State: closed - Opened by BRamiroSanchez about 1 year ago - 6 comments
Labels: help wanted

#296 - Help with selecting data for BIOMOD_modelling - [normality of large sample sizes]

Issue - State: closed - Opened by GitBen01 about 1 year ago - 1 comment
Labels: modeling question

#295 - Question about getting predictions from outfile

Issue - State: closed - Opened by LindeNozomiLeo about 1 year ago - 4 comments
Labels: modeling question

#294 - Help with BIOMOD_EnsembleModeling - meanbyTSS vs meanbyROC

Issue - State: closed - Opened by LindeNozomiLeo over 1 year ago - 1 comment
Labels: help wanted

#293 - Unexpected error in GAM algorithm of BIOMOD.modeling

Issue - State: closed - Opened by LorenzoBernicchi over 1 year ago - 16 comments
Labels: bug, modeling question

#292 - Help with BIOMOD_modeling- [why Maxent failed during runing?]

Issue - State: closed - Opened by mula-jpg over 1 year ago - 1 comment
Labels: help wanted

#291 - Why Maxent failed during running the BIOMOD_Modeling?

Issue - State: closed - Opened by mula-jpg over 1 year ago - 5 comments
Labels: help wanted, outdated

#288 - R session crashed without any warnings or errors being reported

Issue - State: closed - Opened by tongruiju over 1 year ago - 8 comments
Labels: bug, outdated

#287 - About the Environment Data Regions Used by Biomod

Issue - State: closed - Opened by colin123-tt over 1 year ago - 4 comments
Labels: modeling question

#286 - Help with get_predictions - Can I get actual and predicted values for my testing set points?

Issue - State: closed - Opened by lewistrotter over 1 year ago - 4 comments
Labels: help wanted

#285 - Help with BIOMOD_PresenceOnly - Can biomod calculate continous boyce index?

Issue - State: closed - Opened by tongruiju over 1 year ago - 9 comments
Labels: help wanted

#284 - Help with get_evaluations ; Cannot find AUC values

Issue - State: closed - Opened by rpatin over 1 year ago - 3 comments
Labels: help wanted

#283 - Help with BinaryTransformation - cannot find the raster

Issue - State: closed - Opened by rpatin over 1 year ago - 5 comments
Labels: help wanted

#281 - Help with BIOMOD_modeling

Issue - State: closed - Opened by rpatin over 1 year ago - 14 comments
Labels: help wanted, version 3.x.x or older

#279 - BIOMOD_FormatingData "No data has been set aside for modeling evaluation" problem

Issue - State: closed - Opened by Pritam31 over 1 year ago - 1 comment
Labels: help wanted

#278 - Help with bm_PlotEvalBoxplot and bm_PlotVarImpBoxplot [group_by]

Issue - State: closed - Opened by guimaricato over 1 year ago - 2 comments
Labels: help wanted

#276 - Help with BIOMOD_FormatingData - incorrect number of dimensions

Issue - State: closed - Opened by Firefly-cy over 1 year ago - 1 comment
Labels: help wanted

#275 - Help with bm_PlotResponseCurves - Response Curve Outputs

Issue - State: closed - Opened by jcarde88 over 1 year ago - 7 comments
Labels: help wanted

#274 - Xgboost

Pull Request - State: closed - Opened by rpatin over 1 year ago

#272 - Variable importance function showing NA for some variables

Issue - State: closed - Opened by CatherineBuckland over 1 year ago - 2 comments
Labels: help wanted

#271 - Error in BIOMOD_Projecting - [Error "[writeStart] file exists]

Issue - State: closed - Opened by MarianMirea over 1 year ago - 6 comments
Labels: help wanted

#270 - Help with BIOMOD_Projection - failing to plot models run with previous biomod2 version

Issue - State: closed - Opened by ninzyfb over 1 year ago - 7 comments
Labels: help wanted

#269 - Calculate the global area of the distribution area（loss，gain，stable0，stable1）

Issue - State: closed - Opened by chenyongpeng1 over 1 year ago - 2 comments
Labels: help wanted

#268 - Error when using factor variables

Issue - State: closed - Opened by ZoGo94 over 1 year ago - 5 comments
Labels: bug

#267 - RF sample sizes in default modeling options

Issue - State: closed - Opened by jllancaster over 1 year ago - 28 comments
Labels: modeling question

#266 - Error in BIOMOD_Projection - Error in { : task 9 failed - "std::bad_alloc"`

Issue - State: closed - Opened by chenyongpeng1 over 1 year ago - 2 comments
Labels: help wanted

#265 - Error in BIOMOD_Projection using sfLapply

Issue - State: closed - Opened by pabloriul over 1 year ago - 6 comments
Labels: bug

#264 - Error in BIOMOD2 4.2-3 [CV.strategy = "user.defined"]

Issue - State: closed - Opened by vanderleidebastiani over 1 year ago - 5 comments
Labels: bug

#263 - Error when running BIOMOD_Modeling

Issue - State: closed - Opened by doliveira9797 over 1 year ago - 2 comments
Labels: help wanted

#262 - calibration problem for ensemble of small models

Issue - State: closed - Opened by nihalk84 over 1 year ago - 14 comments
Labels: help wanted, version 3.x.x or older, external problem

#261 - TSS and AUC of "Random Forest" algorithm have strange scores

Issue - State: closed - Opened by LorenzoBernicchi over 1 year ago - 6 comments
Labels: modeling question

#260 - Help with BIOMOD_FormatingData : error using a test dataset

Issue - State: closed - Opened by ghost over 1 year ago - 1 comment
Labels: help wanted

#259 - Error in BIOMOD_EnsembleForecasting

Issue - State: closed - Opened by guimaricato over 1 year ago - 3 comments
Labels: bug

#258 - 'get_evaluations' doesn't show evaluation values

Issue - State: closed - Opened by guimaricato over 1 year ago - 2 comments
Labels: modeling question

#255 - biomod2 with categorical variables

Issue - State: closed - Opened by Bellerophon92 over 1 year ago - 7 comments
Labels: modeling question

#254 - xgboost

Pull Request - State: closed - Opened by rpatin over 1 year ago

#253 - Help with BIOMOD_FormatingData - Automatic transformation and standardisation of variables

Issue - State: closed - Opened by GitBen01 over 1 year ago - 1 comment
Labels: help wanted

#252 - How to download random points？

Issue - State: closed - Opened by colin123-tt over 1 year ago - 2 comments
Labels: help wanted

#251 - Question about [BIOMOD_EnsembleForecasting] - [looping multiple future scenarios]

Issue - State: closed - Opened by brblais over 1 year ago - 5 comments
Labels: modeling question, outdated

#250 - Help with BIOMOD_Projection - What is the optimal threshold?

Issue - State: closed - Opened by GitBen01 over 1 year ago - 3 comments
Labels: help wanted

#249 - Error in x$.self$finalize() : attempt to apply non-function - BIOMOD_Projection()

Issue - State: closed - Opened by estellebruni over 1 year ago - 2 comments
Labels: help wanted

#248 - setup issue template

Pull Request - State: closed - Opened by rpatin over 1 year ago

#247 - Assistance is needed in interpreting the results of random forests and ensemble models.

Issue - State: closed - Opened by Wonhyeop over 1 year ago - 5 comments
Labels: modeling question, outdated

#246 - Exporting a data.frame with Variables' values at presence and (pseudo)absences locations

Issue - State: closed - Opened by LorenzoBernicchi over 1 year ago - 3 comments
Labels: help wanted

#245 - MAXENT preventing the EnsembleForecasting function of running

Issue - State: closed - Opened by beardant over 1 year ago - 1 comment
Labels: bug, external problem

#244 - Bugfix for 4.2-3

Pull Request - State: closed - Opened by rpatin over 1 year ago

#243 - Can we use a separate set of data for the validation dataset

Issue - State: closed - Opened by colin123-tt over 1 year ago - 4 comments
Labels: help wanted

#242 - Gaps in the projected ensemble maps

Issue - State: closed - Opened by jpmaalouf over 1 year ago - 7 comments
Labels: modeling question

#241 - Projection of XY coordinates

Issue - State: closed - Opened by beardant over 1 year ago - 1 comment
Labels: modeling question

#240 - Maxent Model Issue: Error in { : task 1 failed - "subscript out of bounds"

Issue - State: closed - Opened by wildlifekarjee17 over 1 year ago - 3 comments
Labels: help wanted

#239 - Error in BIOMOD_PresenceOnly()

Issue - State: closed - Opened by wildlifekarjee17 over 1 year ago - 1 comment
Labels: bug

#238 - Manual pseudo-absence selection

Issue - State: closed - Opened by beardant over 1 year ago

#237 - d

Issue - State: closed - Opened by merijnvdb over 1 year ago

#236 - Formating data with user defined pseudo-absences

Issue - State: closed - Opened by estellebruni over 1 year ago - 7 comments
Labels: help wanted

#235 - Is there a way to import the ```.out``` files that biomod generates?

Issue - State: closed - Opened by Nickmofoe over 1 year ago - 1 comment
Labels: help wanted

#234 - Error messege in BIOMOD_FormatingData

Issue - State: closed - Opened by madeka89 over 1 year ago - 6 comments
Labels: bug

#233 - About project ensemble models (from single projections)

Issue - State: closed - Opened by 675979649 over 1 year ago - 12 comments
Labels: bug

#232 - About myBiomodModelOut

Issue - State: closed - Opened by 675979649 over 1 year ago - 10 comments
Labels: bug

#231 - Calculating validation values for the ensemble model

Issue - State: closed - Opened by Nickmofoe over 1 year ago - 1 comment
Labels: modeling question

#229 - Version 4.2-3 Pseudo-absences and Cross-validation

Pull Request - State: closed - Opened by rpatin over 1 year ago

#228 - Models cannot compute if species names are numbers

Issue - State: open - Opened by Farewe over 1 year ago - 1 comment
Labels: bug

#227 - Error with multispecies wrapper from ENM 2020 course

Issue - State: closed - Opened by rpatin over 1 year ago - 3 comments
Labels: bug

#226 - Error in tutorial **Error in { : task 1 failed - "cannot open the connection"**

Issue - State: closed - Opened by rpatin over 1 year ago - 3 comments
Labels: bug

#225 - Question regarding evaluation data while plotting

Issue - State: closed - Opened by Nickmofoe over 1 year ago - 2 comments
Labels: help wanted

#224 - weights of true absences versus pseudo absences

Issue - State: closed - Opened by arnaudlyet over 1 year ago - 1 comment
Labels: modeling question

#223 - MAXENT error for help

Issue - State: closed - Opened by chenyongpeng1 over 1 year ago - 1 comment
Labels: bug, outdated

#221 - Maxent error and empty SRE file created by BIOMOD_Projection()

Issue - State: closed - Opened by r-fernandezz over 1 year ago - 9 comments
Labels: bug, external problem

#220 - Rangesize and get_predictions issue

Issue - State: closed - Opened by CarbonEd14 over 1 year ago - 9 comments
Labels: help wanted

#219 - RangeSize results question

Issue - State: closed - Opened by JiangXin-NWU over 1 year ago - 5 comments
Labels: help wanted

#218 - Categorical variables error message

Issue - State: closed - Opened by ellalewi547 over 1 year ago - 8 comments
Labels: help wanted

#217 - Rangesize_Problem

Issue - State: closed - Opened by JiangXin-NWU over 1 year ago - 3 comments
Labels: help wanted, outdated

#216 - Serious differences in biomod2 versions seen in model results

Issue - State: closed - Opened by suicmezburak over 1 year ago - 5 comments
Labels: bug, modeling question

#215 - Merge projected outputs

Issue - State: closed - Opened by PhilipFaure over 1 year ago - 4 comments
Labels: modeling question

#214 - 213 bug in .get_env_class

Pull Request - State: closed - Opened by CeresBarros over 1 year ago - 1 comment

#213 - bug in .get_env_class

Issue - State: closed - Opened by CeresBarros over 1 year ago - 4 comments
Labels: bug, devel