biomodhub/biomod2 issues and pull requests

#421 - Bias file - How can I add a bias file when using MaxEnt?

Issue - State: closed - Opened by luispedrosantiago 7 months ago - 1 comment
Labels: modeling question

#420 - Help with BIOMOD - C drive increasing GB & getting full -- where does biomod2 write files to

Issue - State: closed - Opened by carlosbedson 8 months ago - 6 comments
Labels: help wanted

#418 - Question about bm_Findoptimstat - ROC uses the wrong threshold?

Issue - State: closed - Opened by EllieHarris-1 8 months ago - 2 comments
Labels: modeling question

#417 - Help with BIOMOD_projection - how to customize the resulting plots

Issue - State: closed - Opened by carmerlun 8 months ago - 2 comments
Labels: help wanted

#416 - Ensemble modeling problem: missing validation values

Issue - State: closed - Opened by haglad 8 months ago - 2 comments
Labels: help wanted

#415 - Help with BIOMOD_4.2-5 - [tune parameters for Random Forest model]

Issue - State: closed - Opened by suicmezburak 8 months ago - 9 comments
Labels: help wanted

#414 - Please what are the units of EMcv

Issue - State: closed - Opened by carlosbedson 8 months ago - 2 comments
Labels: modeling question

#413 - Question about [single model evaluations]- [Can someone kindly share with me how to increase tss value? I am a beginner in SDM]

Issue - State: closed - Opened by tiancaiwenwen 8 months ago
Labels: help wanted

#412 - BIOMOD_EnsembleModeling Error when running code

Issue - State: closed - Opened by Joost134 8 months ago - 2 comments
Labels: modeling question

#411 - Error in BIOMOD - manual caption of terrain() cutoff

Issue - State: closed - Opened by eragrostis 8 months ago - 1 comment
Labels: bug, external problem

#410 - Question about [wrong projectoin output] - [my BIOMOD_Projection give an output of only 0 in each cell of the raster stack]

Issue - State: closed - Opened by GISilvia 8 months ago - 8 comments
Labels: modeling question

#409 - BIOMOD error: argument 1 matches multiple formal arguments

Issue - State: closed - Opened by srknozdemir 8 months ago - 1 comment
Labels: modeling question, version 3.x.x or older

#408 - Help with biomod2::response.plot2 - Error in .response.plot2.check.arg(models, Data, show.variables, save.file, : you need to load the models selected!

Issue - State: closed - Opened by srknozdemir 8 months ago - 1 comment
Labels: help wanted, version 3.x.x or older

#408 - Help with biomod2::response.plot2 - Error in .response.plot2.check.arg(models, Data, show.variables, save.file, : you need to load the models selected!

Issue - State: open - Opened by srknozdemir 8 months ago - 1 comment
Labels: help wanted, version 3.x.x or older

#407 - Custom cutoff threshold evaluations

Issue - State: closed - Opened by anackr 8 months ago - 4 comments
Labels: help wanted

#406 - Question about using TSS for binary transformation

Issue - State: closed - Opened by EllieHarris-1 8 months ago - 2 comments
Labels: modeling question

#405 - Please is it possible to produce Evaluation Strip for categorical values with the category values on x axis at bottom as separate ticks not as implied continuous values

Issue - State: closed - Opened by carlosbedson 8 months ago - 2 comments
Labels: enhancement

#404 - Help with BIOMOD_Modeling() - [provide environmental raster directly as dataframe in spatio-tamporal data modeling]

Issue - State: closed - Opened by carmerlun 8 months ago - 2 comments
Labels: help wanted

#403 - Model weights

Issue - State: open - Opened by eragrostis 9 months ago - 1 comment
Labels: modeling question

#403 - Model weights

Issue - State: open - Opened by eragrostis 9 months ago - 1 comment
Labels: modeling question

#402 - Inaccurate warning message in bm_ModelingOptions()

Issue - State: open - Opened by Farewe 9 months ago - 1 comment
Labels: bug

#402 - Inaccurate warning message in bm_ModelingOptions()

Issue - State: open - Opened by Farewe 9 months ago - 1 comment
Labels: bug

#401 - Help with BIOMOD_xxx - [format for default setting]

Issue - State: closed - Opened by SLL629 9 months ago - 5 comments
Labels: help wanted

#400 - Error in BIOMOD_Modeling - BIOMOD_Modeling() no longer handles well failed models

Issue - State: closed - Opened by Farewe 9 months ago - 2 comments
Labels: bug

#399 - Help with BIOMOD_EnsembleForecasting - [I can't get my predicted value]

Issue - State: closed - Opened by TY-dispersal 9 months ago - 2 comments
Labels: help wanted

#398 - Help with BIOMOD_ModelingOptions - sampsize argument in RF

Issue - State: closed - Opened by kkougiou 9 months ago - 3 comments
Labels: help wanted

#397 - Please advise what is meant by the range change definitions "Future range size no dispersal vs full dispersal"

Issue - State: open - Opened by carlosbedson 9 months ago - 1 comment
Labels: help wanted

#397 - Please advise what is meant by the range change definitions "Future range size no dispersal vs full dispersal"

Issue - State: open - Opened by carlosbedson 9 months ago - 2 comments
Labels: help wanted

#396 - Help with BIOMOD_xxx - [BIOMOD_FormatingData]

Issue - State: closed - Opened by aliomer89 9 months ago - 1 comment
Labels: help wanted

#395 - Add website link to DESCRIPTION

Pull Request - State: closed - Opened by olivroy 9 months ago

#394 - Question about ensemble modelling - How are predictions below 0 or above 1000 handled?

Issue - State: open - Opened by Farewe 9 months ago - 1 comment
Labels: modeling question

#393 - User-defined model parameters are not passed to individual models, functions bm_ModelingOptions() & BIOMOD_Modeling()

Issue - State: closed - Opened by Farewe 9 months ago - 5 comments
Labels: bug

#392 - Error in BIOMOD_Modeling - [I am running the MAXENT algorithm with bigboss options in biomod2 4.2.5 version, I get the following error when I try to run the model "unused argument (temp_workdir = MWD$m_outdir)"]

Issue - State: closed - Opened by TDphoneix 9 months ago - 4 comments
Labels: bug

#391 - Error in BIOMOD_Modeling - [I am running the MAXENT algorithm in bigboss settings, I get the following error when I try to run the model]

Issue - State: closed - Opened by TDphoneix 9 months ago
Labels: bug

#390 - Help with BIOMOD_- PA's not generated

Issue - State: closed - Opened by beardant 9 months ago - 1 comment
Labels: help wanted

#389 - Error in BIOMOD_FormatingData - Error: Not compatible with requested type: [type=character; target=double].

Issue - State: closed - Opened by Daviser95 9 months ago - 7 comments
Labels: bug

#388 - Not able to read ensemble output "biomod.ensemble.model.out" using load function.

Issue - State: closed - Opened by prajapatijyoti23 9 months ago - 2 comments
Labels: bug

#387 - Error: no species selected

Issue - State: closed - Opened by anackr 10 months ago - 2 comments
Labels: help wanted

#386 - Help with - [can't load my data properly]

Issue - State: closed - Opened by yasirdogan 10 months ago - 7 comments
Labels: help wanted

#385 - What is difference # Project ensemble models (from single projections) vs # Project ensemble models (building single projections) ?

Issue - State: closed - Opened by carlosbedson 10 months ago - 2 comments
Labels: help wanted

#384 - Question about binary maps ensemble_TSSbin.tif

Issue - State: closed - Opened by Lisa-Tedeschi 10 months ago - 2 comments
Labels: modeling question

#383 - Exaggerated one variable relative to others

Issue - State: closed - Opened by mula-jpg 10 months ago - 5 comments
Labels: help wanted

#382 - Issue with Response Curve Smoothing in GAM_gam Models Using BIOMOD2

Issue - State: closed - Opened by fredericlabouyrie 10 months ago - 1 comment
Labels: modeling question

#380 - Help with BIOMOD_4.2-5 - [Using different packages for GAM tuning]

Issue - State: closed - Opened by ozgurhsyndgn 10 months ago - 1 comment
Labels: help wanted

#379 - How to install the ggbiplot in r 4.2.3

Issue - State: closed - Opened by Ahmed4378 10 months ago - 1 comment

#377 - TSS bin and current prediction map are both giving binary maps in ANN

Issue - State: closed - Opened by rajit1993 10 months ago - 1 comment
Labels: modeling question

#376 - Error in BIOMOD.formated.data [I am tring to run the code for mutiple spcies and get this erro 'checkForRemoteErrors(val)']

Issue - State: closed - Opened by evertonmaciel 10 months ago - 3 comments
Labels: bug

#375 - Help with BIOMOD_Ensemble Modeling- [Why algorithms below the metric.select.thresh vabue included for ensemble??

Issue - State: closed - Opened by mula-jpg 10 months ago - 9 comments
Labels: help wanted

#374 - BIOMOD_EnsembleForecasting- em.by

Issue - State: closed - Opened by NadiaVic 10 months ago - 1 comment
Labels: modeling question

#373 - Question about [generic topic] - [short and concise question]

Issue - State: closed - Opened by andreslrc200983 10 months ago - 5 comments
Labels: modeling question

#372 - Question about [Model output results] - [Sites with species occurrence data were predicted to have no presence of the species.]

Issue - State: closed - Opened by Data-Madman 10 months ago - 1 comment
Labels: modeling question

#371 - Error in BIOMOD_xxx - [Error when running BIOMOD_EnsembleForecasting]

Issue - State: closed - Opened by janinepdasilva 10 months ago - 7 comments
Labels: bug

#370 - Error in BIOMOD_ModelingOptions - [>could not find function "BIOMOD_ModelingOptions"<]

Issue - State: closed - Opened by ddreza 11 months ago - 1 comment
Labels: bug

#369 - RF TSS values differ strongly between versions

Issue - State: closed - Opened by JotDotW 11 months ago - 1 comment

#368 - Error in BIOMOD_xxx - [models.evaluation object from ensemble modeling with NA in validation]

Issue - State: closed - Opened by janinepdasilva 11 months ago - 2 comments
Labels: bug

#367 - Help with BIOMOD_xxx - [short question here]

Issue - State: closed - Opened by andreslrc200983 11 months ago
Labels: help wanted

#366 - MaxEnt in Biomod2 - Model runs (NbRunEval)

Issue - State: closed - Opened by luispedrosantiago 11 months ago - 6 comments
Labels: modeling question

#365 - Help with BIOMOD_Modelling: How use models.pa argument

Issue - State: closed - Opened by NadiaVic 11 months ago - 2 comments
Labels: help wanted

#364 - Error in { : task 12 failed - "Feature names stored in `object` and `newdata` are different!"

Issue - State: closed - Opened by yuliaUU 11 months ago - 7 comments
Labels: bug

#363 - Error in BIOMOD_Modeling - c("GBM", "GLM" ...)

Issue - State: closed - Opened by woojunbang 11 months ago - 1 comment
Labels: bug

#362 - Error in BIOMOD_Modeling - (variable lengths differ) and (object 'model.bm' not found)

Issue - State: closed - Opened by Data-Madman 11 months ago - 2 comments
Labels: bug

#361 - Error in { : task 2 failed - "Feature names stored in `object` and `newdata` are different!"

Issue - State: closed - Opened by yuliaUU 11 months ago - 1 comment
Labels: bug

#360 - Help with BIOMOD_xxx - validation vs calibration and model performance

Issue - State: closed - Opened by LindeNozomiLeo 11 months ago - 2 comments
Labels: help wanted

#359 - Current VS Future

Issue - State: closed - Opened by xiadawei123 11 months ago - 3 comments

#358 - Help with BIOMOD_EnsembleForecasting - Error: [writeRaster] path does not exist

Issue - State: closed - Opened by WXP000 11 months ago - 2 comments
Labels: help wanted

#357 - Question about BIOMOD_Projection output - Change in output pdf resolution

Issue - State: closed - Opened by Data-Madman 11 months ago - 5 comments
Labels: modeling question

#356 - Biomod2 has an error while modeling Maxent，such as Error in MAXENT, more info available in [short error summary here]

Issue - State: closed - Opened by xiangyataboy 11 months ago - 3 comments
Labels: bug

#355 - Error in BIOMOD_2 - MAXENT "object 'Back_swd' not found"

Issue - State: closed - Opened by Unidad-Robotica-Dlab 11 months ago - 3 comments
Labels: bug

#354 - Could you tell me how to use different pseudo-absence points for each algorithm in the latest version of Biomod2?

Issue - State: closed - Opened by ReisDO 11 months ago - 2 comments
Labels: help wanted

#353 - BIOMOD_Projection clamping error 'writeRaster': [subset] you cannot select a layer with a name that is not unique""

Issue - State: closed - Opened by rwdearth 11 months ago - 1 comment
Labels: bug

#352 - Help with BIOMOD_Formatingdata - differences between undefined data and pseudo-absences.

Issue - State: closed - Opened by joshc99 11 months ago - 4 comments
Labels: help wanted

#351 - Compared with the current situation

Issue - State: closed - Opened by xiadawei123 11 months ago - 1 comment
Labels: modeling question

#350 - formatting user.defined table for CV in modeling SDM transferability

Issue - State: closed - Opened by rwdearth 12 months ago - 4 comments
Labels: modeling question

#349 - The "std::bad_alloc" error when using BIOMOD_RangeSize

Issue - State: closed - Opened by xiadawei123 12 months ago - 5 comments

#348 - Help with BIOMOD_xxx - Hi, I am using biomod2 with binary data for future projections with GLM, GAM, GBM, RF but when the model gives error for GBM Error in serialize(data, node$con) : error writing to connection. Any idea why? The other methods work normally.

Issue - State: closed - Opened by agnesM90 12 months ago - 6 comments
Labels: help wanted

#332 - Question about ensemble spatial projection - which Cross Validation runs should be kept to build the ensemble model and subsequent most accurate spatial projection?

Issue - State: closed - Opened by francescorota93 about 1 year ago - 2 comments
Labels: modeling question

#326 - Question about [Multiple species ensemble modeling] - [Can someone kindly share with me generic R code for multispecies ensemble modeling? I am beginner in SDM ]

Issue - State: closed - Opened by JobMOd about 1 year ago - 1 comment
Labels: help wanted

#324 - Future projection Error

Issue - State: closed - Opened by mula-jpg about 1 year ago - 13 comments
Labels: help wanted

#323 - Error when using snowfall::sfLapply combined with biomod2 - could not find function "extract"

Issue - State: closed - Opened by JobMOd about 1 year ago - 7 comments
Labels: help wanted

#322 - Please, can anyone tell me how to export geotif figures from the Biomod2 repackage for further processing in ArcGIS? including commands?

Issue - State: closed - Opened by Ahmed4378 about 1 year ago - 1 comment
Labels: help wanted

GitHub / biomodhub/biomod2 issues and pull requests