Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / biologyguy/BuddySuite issues and pull requests
#128 - Error on Anaconda Environment Install: ModuleNotFoundError: No module named 'buddy_resources'
Issue -
State: closed - Opened by john-k-boyd about 4 years ago
- 5 comments
#127 - "FTP Error: got more than 8192 bytes"
Issue -
State: closed - Opened by dougwyu over 5 years ago
- 1 comment
#126 - AlignBuddy in multiple cores
Issue -
State: closed - Opened by amartinezgarcia over 6 years ago
- 5 comments
#125 - Error report: DBBuddy
Issue -
State: open - Opened by biologyguy over 6 years ago
#124 - Pull Records blank line issue
Issue -
State: closed - Opened by biologyguy over 6 years ago
#123 - Change function names: split_by_x_files and split_by_seq_number
Pull Request -
State: closed - Opened by paulgzlz over 6 years ago
- 1 comment
#122 - Add split_by_seq_number function
Pull Request -
State: closed - Opened by paulgzlz almost 7 years ago
- 1 comment
#121 - Add function split_by_file_number
Pull Request -
State: closed - Opened by paulgzlz almost 7 years ago
- 2 comments
#120 - Return no records when using Sb.pull_recs() with empty file
Issue -
State: closed - Opened by biologyguy almost 7 years ago
Labels: bug
#119 - Sb.split_to_x_files() and Sb.split_to_x_records()
Issue -
State: closed - Opened by biologyguy almost 7 years ago
- 1 comment
Labels: New Function
#118 - Add circular to -frs and -isd
Pull Request -
State: closed - Opened by paulgzlz almost 7 years ago
- 6 comments
#117 - Sb.accn2name()
Issue -
State: open - Opened by biologyguy almost 7 years ago
Labels: New Function
#116 - Alb.validate_alignments()
Issue -
State: open - Opened by biologyguy almost 7 years ago
Labels: New Function
#115 - sb -ppo add number to identical prefixes
Pull Request -
State: closed - Opened by paulgzlz almost 7 years ago
- 2 comments
#114 - problem with deleting invariant sites
Issue -
State: closed - Opened by thkuo almost 7 years ago
- 1 comment
#113 - Add weighted mode to Alb.consensus
Pull Request -
State: closed - Opened by paulgzlz about 7 years ago
- 2 comments
#112 - Convert to Python3
Pull Request -
State: closed - Opened by ralic over 7 years ago
- 2 comments
#111 - NCBI switched to full ACCN support (drops GI)
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: bug, Critical
#110 - Prune taxa error
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 4 comments
Labels: bug
#109 - Add support for circular sequences
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: enhancement
#108 - Add in Connor Skennerton to LICENSE file
Pull Request -
State: closed - Opened by ctSkennerton over 7 years ago
#107 - DatabaseBuddy save states across Python versions
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: bug
#106 - Python 3.6 breaks Travis-CI builds
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: bug
#105 - PhyloBuddy: add in ascending and descending sorting of nodes
Pull Request -
State: closed - Opened by ctSkennerton over 7 years ago
- 10 comments
#104 - Allow DatabaseBuddy to run without launching a live shell
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: enhancement
#103 - Add a provenance tracker
Issue -
State: open - Opened by biologyguy over 7 years ago
Labels: enhancement
#102 - Catch multiple flags
Issue -
State: open - Opened by biologyguy over 7 years ago
Labels: enhancement
#101 - DBBuddy result slices
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: enhancement
#100 - NEXUS interleaved/sequential
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 3 comments
Labels: enhancement
#99 - Wrap alignment and tree inference web services
Issue -
State: open - Opened by biologyguy over 7 years ago
Labels: enhancement
#98 - Start-end coordinates for `find` tools
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: enhancement
#97 - DBBuddy summaries
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: enhancement
#96 - Test builds on various Python versions with Tox
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: enhancement
#95 - Add gff3 support
Issue -
State: open - Opened by biologyguy over 7 years ago
Labels: enhancement
#94 - Try to manage input as streams instead of storing everything in RAM
Issue -
State: open - Opened by biologyguy over 7 years ago
- 2 comments
Labels: enhancement
#93 - Dynamically adjust argparse help output to fit the user's terminal window.
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: enhancement
#92 - 'Lazy' imports.
Issue -
State: open - Opened by biologyguy over 7 years ago
- 1 comment
Labels: enhancement
#91 - Implement -s flag to set a seed value.
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: enhancement
#90 - Function requests
Issue -
State: closed - Opened by biologyguy over 7 years ago
- 1 comment
Labels: enhancement
#89 - Properly handle KeyboardInterrupt in DBBuddy
Issue -
State: closed - Opened by biologyguy over 7 years ago
Labels: bug
#88 - PhyloBuddy handling of unrecognized args
Issue -
State: closed - Opened by biologyguy almost 8 years ago
- 1 comment
#87 - Format wiki pages for extended command line help
Issue -
State: open - Opened by biologyguy almost 8 years ago
- 2 comments
Labels: enhancement
#86 - Alex dev
Pull Request -
State: closed - Opened by alexanjm almost 8 years ago
- 1 comment
#85 - Create Jupyter notebooks to demonstrate functionality
Issue -
State: open - Opened by biologyguy almost 8 years ago
Labels: enhancement
#84 - combining seqbuddy -dm and -cs command line options
Issue -
State: closed - Opened by sellisd almost 8 years ago
- 1 comment
#83 - seqbuddy rename ids
Issue -
State: closed - Opened by sellisd almost 8 years ago
- 4 comments
#82 - Switch README to rst format
Issue -
State: closed - Opened by biologyguy about 8 years ago
- 1 comment
#81 - Consider migrating Wiki to PanDocs
Issue -
State: open - Opened by biologyguy about 8 years ago
Labels: enhancement
#80 - Feature: SeqBuddy.pull_recs_with_feature
Issue -
State: closed - Opened by biologyguy about 8 years ago
- 1 comment
#79 - Wiki page for extract_feature_sequences
Issue -
State: closed - Opened by biologyguy about 8 years ago
- 2 comments
#78 - replacements function in buddy_resources does weird things with parenthesis (when searching from right to left)
Issue -
State: closed - Opened by KarlKeat about 8 years ago
- 1 comment
#77 - Handle the common raxml names (PhyloBuddy)
Issue -
State: closed - Opened by biologyguy about 8 years ago
- 1 comment
#76 - Create 'TimeIt' program to performance test all BuddySuite tools
Issue -
State: closed - Opened by biologyguy about 8 years ago
#75 - Update LICENSE
Pull Request -
State: closed - Opened by djmitche about 8 years ago
- 1 comment
#74 - Added name to contributor list w/ Public Domain License.
Pull Request -
State: closed - Opened by etiology about 8 years ago
#73 - Make work Public Domain
Pull Request -
State: closed - Opened by biojerm about 8 years ago
- 1 comment
#72 - Added name to contributor list w/ Public Domain License.
Pull Request -
State: closed - Opened by apalm112 about 8 years ago
#71 - Add 'Jason Bowen * Public Domain' to LICENSE.txt
Pull Request -
State: closed - Opened by jwbowen about 8 years ago
#70 - Write unit tests for buddy_resources
Issue -
State: closed - Opened by biologyguy about 8 years ago
- 1 comment
#69 - Create dedicated folder for diagnostics
Issue -
State: closed - Opened by KarlKeat about 8 years ago
- 1 comment
#68 - Feature requests for V 1.3
Issue -
State: closed - Opened by biologyguy over 8 years ago
#67 - Link to MEME suite in SB Purge page is dead
Issue -
State: closed - Opened by KarlKeat over 8 years ago
- 4 comments
#66 - Unknown Blast binaries and zips in codebase
Issue -
State: closed - Opened by Cabalist over 8 years ago
- 2 comments
#65 - Weird Imports
Issue -
State: closed - Opened by Cabalist over 8 years ago
- 2 comments
#64 - SB prosite_scan and cd_hit functions break alphabetic order
Issue -
State: closed - Opened by KarlKeat over 8 years ago
- 2 comments
#63 - Feature request: pull out feature sequence
Issue -
State: closed - Opened by biologyguy over 8 years ago
- 1 comment
#62 - Implement 'Find open reading frames' tool in SeqBuddy
Issue -
State: closed - Opened by biologyguy over 8 years ago
- 1 comment
#61 - Implement 'Validate' tool in AlignBuddy
Issue -
State: closed - Opened by biologyguy over 8 years ago
- 1 comment
#60 - Added a section about using shell aliases for short-form commands ins…
Pull Request -
State: closed - Opened by jwbowen over 8 years ago
#59 - How does everyone feel about a requirements file?
Issue -
State: closed - Opened by etiology over 8 years ago
- 7 comments
#58 - Reimplement .conf file and usage tracking
Issue -
State: closed - Opened by biologyguy over 8 years ago
- 6 comments
#57 - Fixes #55 attempt 2
Pull Request -
State: closed - Opened by etiology over 8 years ago
- 1 comment
#56 - Fixes #55
Pull Request -
State: closed - Opened by etiology over 8 years ago
- 6 comments
#55 - Test Fixtures need to be cleaned up
Issue -
State: closed - Opened by etiology over 8 years ago
- 2 comments
#54 - Issue 47
Pull Request -
State: closed - Opened by jwbowen over 8 years ago
#53 - PhyloBuddy new feature request for collapsing polytomies
Issue -
State: closed - Opened by jmillar201 over 8 years ago
- 1 comment
#52 - Issue 49
Pull Request -
State: closed - Opened by jwbowen over 8 years ago
#51 - Issue 49
Pull Request -
State: closed - Opened by jwbowen over 8 years ago
- 1 comment
#50 - Move MyFuncs code over to buddy_resources
Issue -
State: closed - Opened by biologyguy over 8 years ago
- 1 comment
#49 - Cleaned files with gaps
Pull Request -
State: closed - Opened by j9chan over 8 years ago
- 4 comments
#48 - Reorganize repo to be more in line with common Python practice
Issue -
State: closed - Opened by jwbowen over 8 years ago
- 5 comments
#47 - Use Distutils/setuptools and make the installation process more inline with common Python practice
Issue -
State: closed - Opened by jwbowen over 8 years ago
- 1 comment
#46 - count_residues estimates frequency '-'. add clean?
Issue -
State: closed - Opened by mendessoares over 8 years ago
- 4 comments
#45 - count_codons tries counting '---'
Issue -
State: closed - Opened by mendessoares over 8 years ago
- 5 comments
#44 - blastp and blastn binaries not found for -bl2s
Issue -
State: closed - Opened by mendessoares over 8 years ago
- 1 comment
#43 - Dump the sequence files from failed hash tests to file
Issue -
State: closed - Opened by biologyguy over 8 years ago
- 3 comments
#40 - How many other's peoples software do we want to unit test
Issue -
State: closed - Opened by biologyguy over 8 years ago
- 2 comments
#29 - seqbuddy suite fails with blast 2.3.0
Issue -
State: closed - Opened by ericbuckley over 8 years ago
- 1 comment
#28 - External Dependency List
Issue -
State: closed - Opened by etiology over 8 years ago
- 1 comment
#25 - Graphical Installer Window Size
Issue -
State: closed - Opened by apalm112 over 8 years ago
- 1 comment
#24 - Graphical Installer Font
Issue -
State: closed - Opened by apalm112 over 8 years ago
- 1 comment
#23 - test suites need to be reorganized
Issue -
State: closed - Opened by etiology over 8 years ago
- 2 comments
#22 - Need to rename packages, modules, and classes (PEP8)
Issue -
State: closed - Opened by etiology over 8 years ago
- 2 comments
#16 - Need Stats on file size(s) used
Issue -
State: closed - Opened by etiology over 8 years ago
- 1 comment
#15 - Break up large modules into smaller ones in a package
Issue -
State: closed - Opened by etiology over 8 years ago
- 1 comment
#14 - Add logging to toolsets
Issue -
State: closed - Opened by etiology over 8 years ago
- 2 comments
#13 - Add Continuous Integration tool to the repo
Issue -
State: closed - Opened by etiology over 8 years ago
- 2 comments
#12 - Add tutorials to documentation
Issue -
State: closed - Opened by etiology over 8 years ago
- 1 comment
#11 - Think about stripping installer from home dir
Issue -
State: closed - Opened by biologyguy over 8 years ago
- 1 comment
#10 - WildCard import in Installer
Issue -
State: closed - Opened by biologyguy almost 9 years ago
- 2 comments