Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / biolab/orange3-bioinformatics issues and pull requests

#351 - Annotator tests crash

Issue - State: open - Opened by markotoplak about 1 month ago
Labels: bug

#350 - Fix cluster analysis example image name

Pull Request - State: closed - Opened by markotoplak about 1 month ago

#349 - Cluster analysis: Fix bugs and use of Gene Selection Component

Pull Request - State: closed - Opened by lenatr99 5 months ago

#348 - Marker Genes: Add DictyBase

Pull Request - State: closed - Opened by lenatr99 9 months ago

#346 - OWDifferentialExpression: fix data inputs and outputs

Pull Request - State: closed - Opened by JakaKokosar about 1 year ago

#346 - OWDifferentialExpression: fix data inputs and outputs

Pull Request - State: closed - Opened by JakaKokosar about 1 year ago

#345 - Raise the required resdk package version

Pull Request - State: closed - Opened by JureZmrzlikar over 1 year ago - 4 comments

#344 - GSEA: sorting and organism bug

Pull Request - State: closed - Opened by lenatr99 over 1 year ago - 1 comment

#343 - [ENH] dictyExpress: Time as ContinuousVariable

Pull Request - State: closed - Opened by lenatr99 over 1 year ago

#342 - [ENH] GEO data sets: fix categorization of variables

Pull Request - State: closed - Opened by lenatr99 over 1 year ago - 1 comment

#341 - [FIX] Fix tests and lint

Pull Request - State: closed - Opened by JakaKokosar over 1 year ago - 1 comment

#339 - Blank Cluster Analysis with blank Gene sets

Issue - State: closed - Opened by lenatr99 over 1 year ago
Labels: bug

#338 - [ENH] Updated documentation

Pull Request - State: closed - Opened by lenatr99 over 1 year ago - 1 comment

#337 - Geo data set variables as categorical

Pull Request - State: closed - Opened by lenatr99 over 1 year ago

#336 - Volcano Plot does not work for data with negative values

Issue - State: open - Opened by lenatr99 over 1 year ago - 1 comment
Labels: bug

#335 - resolwe.utils: time as column name for Dicty express data

Pull Request - State: closed - Opened by JakaKokosar over 1 year ago

#334 - Differential Expression Widget generates a blank output and error message

Issue - State: closed - Opened by IaelWM over 1 year ago - 4 comments
Labels: bug

#332 - Gene Enrichment Widget does not Receive Tax info from Gene Info Widget

Issue - State: closed - Opened by DLWheeler almost 2 years ago
Labels: bug

#331 - Sort does not work within Gene Enrichment Widget

Issue - State: open - Opened by DLWheeler almost 2 years ago - 1 comment
Labels: bug

#330 - CI - Automatic rebase

Pull Request - State: closed - Opened by PrimozGodec about 2 years ago

#329 - [ENH] Updated marker genes icon

Pull Request - State: closed - Opened by larazupan about 2 years ago

#328 - [FIX] OWSingleSampleScoring: fix icon path

Pull Request - State: closed - Opened by JakaKokosar about 2 years ago

#327 - [FIX] OWGeneSetEnrichment: fix icon path

Pull Request - State: closed - Opened by JakaKokosar about 2 years ago

#326 - [ENH] Updated widget icons

Pull Request - State: closed - Opened by larazupan about 2 years ago

#325 - [ENH] Rework Gene Sets widget

Pull Request - State: closed - Opened by JakaKokosar about 2 years ago

#324 - [ENH] OWSingleSampleScoring: add a new widget

Pull Request - State: closed - Opened by JakaKokosar about 2 years ago

#322 - [ENH] Export gene sets enrichment report

Pull Request - State: closed - Opened by JakaKokosar over 2 years ago

#321 - [ENH] update ci and fix lint warnings

Pull Request - State: closed - Opened by JakaKokosar over 2 years ago

#318 - [FIX] Rework GEO datasets model

Pull Request - State: closed - Opened by ales-erjavec over 2 years ago

#317 - Export Pathways report from the Enrichment Analysis tool

Issue - State: closed - Opened by Sparty87 over 2 years ago - 2 comments
Labels: enhancement, discussion, Idea

#315 - Genialis Expressions widget does not work with the general descriptor schema

Issue - State: closed - Opened by AnzeLovse over 2 years ago - 1 comment
Labels: bug

#314 - [FIX] Replace colorpalette and other necessary fixes

Pull Request - State: closed - Opened by PrimozGodec over 2 years ago - 1 comment

#313 - [FIX] Fix compatibility with Python 3.10

Pull Request - State: closed - Opened by ales-erjavec over 2 years ago

#312 - Annotate widget crashes after generating results

Issue - State: closed - Opened by DLWheeler over 2 years ago - 1 comment

#311 - [ENH] Add QC data to Genialis Expression widget

Pull Request - State: closed - Opened by JakaKokosar almost 3 years ago

#310 - Genialis Expressions widget should be updated to account for the breaking changes in ReSDK

Issue - State: closed - Opened by mstajdohar almost 3 years ago - 5 comments
Labels: bug

#309 - Export results of Gene Set Enrichment

Issue - State: closed - Opened by brainy-ninja almost 3 years ago - 1 comment
Labels: enhancement

#308 - Annotate Projection: Fix commit invoke

Pull Request - State: closed - Opened by VesnaT almost 3 years ago

#307 - kegg: ORG_CODE as new entry in KEGG Genome databse

Pull Request - State: closed - Opened by JakaKokosar almost 3 years ago

#306 - GEO Data Sets resorts rows after selection of the data set

Issue - State: closed - Opened by BlazZupan about 3 years ago
Labels: bug

#305 - GEO Data Sets crushes on sorting on download column

Issue - State: closed - Opened by BlazZupan about 3 years ago
Labels: bug

#304 - Add QC values to Genialis Expressions widget

Issue - State: closed - Opened by JureZmrzlikar about 3 years ago
Labels: enhancement, discussion, Idea

#303 - dictyExpress not working

Issue - State: open - Opened by robertcv over 3 years ago - 2 comments
Labels: bug

#302 - Crash on KEGG Pathways

Issue - State: closed - Opened by robertcv over 3 years ago
Labels: bug

#301 - Cannot unselect gene in Genes widget

Issue - State: open - Opened by robertcv over 3 years ago
Labels: bug

#300 - Manualy match genes in Genes widget

Issue - State: open - Opened by robertcv over 3 years ago
Labels: enhancement, discussion, Idea

#299 - Keep docutils <0.16 for documentation

Pull Request - State: closed - Opened by PrimozGodec over 3 years ago - 1 comment

#288 - [FIX] Adjust for changes in widget auto-summary process

Pull Request - State: closed - Opened by PrimozGodec over 3 years ago

#287 - Annotator not accepting input

Issue - State: closed - Opened by DLWheeler over 3 years ago - 4 comments
Labels: bug

#286 - Change the documentation theme to sphinx_rtd_theme

Pull Request - State: closed - Opened by PrimozGodec over 3 years ago

#285 - [ENH] OWGenialisExpressions: use CollectionTables to fetch data

Pull Request - State: closed - Opened by JakaKokosar over 3 years ago

#284 - Add titles to boxes

Issue - State: closed - Opened by janezd almost 4 years ago
Labels: bug, good first issue

#283 - ci: use pypa build project for building dist files [skip ci]

Pull Request - State: closed - Opened by JakaKokosar almost 4 years ago

#282 - [ENH] OWdictyExpress: use CredentialManager and ConcurrentWidgetMixin

Pull Request - State: closed - Opened by JakaKokosar almost 4 years ago

#281 - [FIX] OWKEGGPathwayBrowser: Fix selection

Pull Request - State: closed - Opened by ales-erjavec about 4 years ago

#280 - maintenance, tox, github actions

Pull Request - State: closed - Opened by JakaKokosar about 4 years ago - 1 comment

#279 - [NEW] Add kaplan-meier widget

Pull Request - State: closed - Opened by JakaKokosar about 4 years ago - 4 comments

#278 - [ENH] Fetch sample metadata

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#277 - [ENH] Sample metadata

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#276 - OWGenialisExpression: show gene matcher report

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#275 - Gene Set Enrichment Widget does not Update When Input Changes

Issue - State: closed - Opened by DLWheeler over 4 years ago - 2 comments
Labels: bug

#273 - [FIX] Failing CI checks

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#269 - [ENH] OWGenialisExpressions: set default sizeHint

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#266 - update widget catalog

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#265 - [ENH] OWGOBrowser: use check_table_annotation decorator on inputs

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#264 - [FIX] preprocess: fix quantile normalization

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#263 - Raise warning on collections with different data feature types

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#262 - [ENH] add OWGenialisExpressions tests

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#261 - [ENH] GenialisExpression: add quantile transform

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago - 1 comment

#260 - [ENH] OWdictyExpress: add new icon

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#259 - Documentation for Genialis Expressions widget

Issue - State: closed - Opened by JakaKokosar over 4 years ago
Labels: enhancement, genialis

#258 - Tests for Genialis Expressions widget

Issue - State: closed - Opened by JakaKokosar over 4 years ago
Labels: enhancement, genialis

#257 - Gene expression normalization

Issue - State: closed - Opened by JakaKokosar over 4 years ago
Labels: enhancement, genialis

#256 - Genialis Expressions widget bugs and issues

Issue - State: closed - Opened by Martin-Spendl over 4 years ago - 17 comments
Labels: bug, Idea, genialis

#255 - Unable to get data from Genialis Expressions widget

Issue - State: closed - Opened by Martin-Spendl over 4 years ago
Labels: bug

#254 - TMM Normalization

Issue - State: closed - Opened by JakaKokosar over 4 years ago
Labels: enhancement, genialis

#253 - Collection metadata

Issue - State: closed - Opened by JakaKokosar over 4 years ago
Labels: enhancement, genialis

#252 - Relations

Issue - State: closed - Opened by JakaKokosar over 4 years ago
Labels: enhancement, genialis

#251 - [ENH] Genialis Expressions widget

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#250 - Genialis Expressions widget

Issue - State: closed - Opened by JakaKokosar over 4 years ago
Labels: new widget, genialis

#249 - Public datasets

Issue - State: closed - Opened by JakaKokosar over 4 years ago - 2 comments
Labels: discussion, Idea, genialis

#248 - Widget title

Issue - State: closed - Opened by JakaKokosar over 4 years ago
Labels: discussion, genialis

#247 - Widget icon

Issue - State: closed - Opened by JakaKokosar over 4 years ago
Labels: discussion, genialis

#245 - ci: setup Github Actions and tox

Pull Request - State: closed - Opened by JakaKokosar over 4 years ago

#244 - Unify add-on descriptions

Pull Request - State: closed - Opened by rokgomiscek over 4 years ago

#243 - [ENH]Annotator: Customizable plot

Pull Request - State: closed - Opened by VesnaT over 4 years ago