bioinfologics/satsuma2 issues and pull requests

#60 - Will not change min_prob

Issue - State: open - Opened by tamsinlh over 1 year ago

#59 - SATSUMA_TOGGLE_ELEMENTS_ERROR

Issue - State: open - Opened by juanyy1607 almost 2 years ago

#58 - ./bin/SatsumaSynteny2/satsuma_run.sh: Not a directory

Issue - State: open - Opened by hannahdevens almost 2 years ago

#57 - Stuck at Kmer array filtered to 31 elements

Issue - State: open - Opened by gargkritika over 2 years ago

#56 - How to cite Satsuma2

Issue - State: open - Opened by AnaUnix over 2 years ago

#55 - Segmentation fault error

Issue - State: open - Opened by sjellerstrand over 2 years ago - 7 comments

#54 - Can a killed job be resumed?

Issue - State: open - Opened by ValentinaBoP over 2 years ago - 1 comment

#53 - Fixing compilation errors with newer gcc versions.

Pull Request - State: open - Opened by snehring almost 3 years ago

#52 - Segmentation fault when running pre-compiled binaries

Issue - State: open - Opened by maiumy about 3 years ago - 3 comments

#37 - Segmentation fault // Connecting to master: Connection refused

Issue - State: open - Opened by fuesseler about 3 years ago

#36 - srun: Job step creation temporarily disabled, retrying

Issue - State: open - Opened by donthuanalyst over 3 years ago - 2 comments

#35 - PLEASE ANSWER THIS! Chromosemble aborting issue

Issue - State: open - Opened by burbrink almost 4 years ago

#34 - how to prevent re-arrangement in Chromosembler

Issue - State: closed - Opened by wuxingbo1986 almost 4 years ago

#33 - Coordinate Reporting Error with BlockDisplaySatsuma

Issue - State: open - Opened by paulhime almost 4 years ago

#32 - Visualizing outputs from Chromosemble

Issue - State: open - Opened by burbrink almost 4 years ago

#31 - ChromosomePaint Color Palette

Issue - State: open - Opened by paulhime over 4 years ago

#30 - test_SatsumaSynteny2 segfaults with gcc7

Issue - State: open - Opened by binlu1981 over 4 years ago

#29 - not shutting down all slaves

Issue - State: open - Opened by Andrew-N-Black over 4 years ago

#28 - Gene annotation after Chromosembler

Issue - State: open - Opened by lucasrocmoreira over 4 years ago - 3 comments

#27 - Segmentation fault (core dumped)

Issue - State: closed - Opened by sateeshperi over 4 years ago - 3 comments

#26 - Unable to find satsuma_run.sh

Issue - State: closed - Opened by dthorburn almost 5 years ago - 2 comments

#25 - Difference Between: Chromosemble & MergeScaffoldsBySynteny

Issue - State: open - Opened by githubgig almost 5 years ago

#24 - Segmentation fault

Issue - State: open - Opened by Lutri22 about 5 years ago - 1 comment

#23 - Satsuma2 dies with: terminate called after throwing an instance of 'std::length_error'

Issue - State: open - Opened by fredlecerf about 5 years ago - 1 comment

#22 - Travis build

Pull Request - State: closed - Opened by jonwright99 about 5 years ago

#21 - Satsuma2 dies with Segmentation fault (core dumped)

Issue - State: open - Opened by claudiamartin94 about 5 years ago - 13 comments

#20 - Running problem

Issue - State: closed - Opened by QindongTang about 5 years ago - 2 comments

#19 - SatsumaSynteny2 wrapper killed on slurm

Issue - State: closed - Opened by kushalsuryamohan over 5 years ago - 1 comment

#18 - Make error

Issue - State: closed - Opened by KristinaGagalova over 5 years ago - 1 comment

#17 - homologous comparison

Issue - State: closed - Opened by mictadlo almost 6 years ago - 1 comment

#16 - Chromosemble: pseudochromosomes or superscaffolds

Issue - State: closed - Opened by fergsc almost 6 years ago - 2 comments

#15 - Citing Satsuma2

Issue - State: closed - Opened by fergsc almost 6 years ago - 2 comments

#14 - speed up

Issue - State: open - Opened by mictadlo almost 6 years ago - 3 comments

#13 - satsuma 3

Issue - State: closed - Opened by mictadlo over 6 years ago - 1 comment

#12 - satsuma dies with memory error

Issue - State: closed - Opened by dcopetti over 6 years ago - 9 comments

#11 - Segmentation fault (core dumped) on test data during KMatch

Issue - State: closed - Opened by conte1 over 6 years ago - 4 comments

#10 - terminate called after throwing an instance of 'std::length_error'

Issue - State: closed - Opened by mictadlo over 6 years ago - 4 comments

#9 - Satsuma for more than 2 species

Issue - State: closed - Opened by mfariasvirgens over 6 years ago - 4 comments

#8 - Satsuma2 installation have following error during "Linking CXX executable bin/KMatch"

Issue - State: closed - Opened by jnarayan81 almost 8 years ago - 2 comments

#7 - Update README.md

Pull Request - State: closed - Opened by ljyanesm about 8 years ago

#6 - Infinite loop: "MAIN: nothing changed, skipping cycle and waiting 3 seconds"

Issue - State: closed - Opened by arendsee about 8 years ago - 3 comments

#5 - test_SatsumaSynteny2 segfaults

Issue - State: closed - Opened by arendsee about 8 years ago - 5 comments

#4 - Github minutia

Pull Request - State: open - Opened by arendsee about 8 years ago

#3 - do_refine option in SatsumaSynteny2

Issue - State: closed - Opened by hughesdj over 8 years ago - 5 comments

#2 - Make fails on Ubuntu 16.04 LTS undefined reference to `pthread_create`

Issue - State: closed - Opened by bschiffthaler over 8 years ago - 1 comment

#1 - gff3 files are not zero-based

Issue - State: closed - Opened by jjdevega over 8 years ago - 1 comment

GitHub / bioinfologics/satsuma2 issues and pull requests