Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bioinfodlsu/rice-pilaf issues and pull requests

#162 - Summary

Pull Request - State: closed - Opened by pbong about 1 year ago

#161 - Add tooltip for explaining columns of summary table

Pull Request - State: closed - Opened by memgonzales about 1 year ago

#159 - Revise results intro for text mining

Pull Request - State: closed - Opened by memgonzales about 1 year ago

#157 - Test release

Pull Request - State: closed - Opened by memgonzales over 1 year ago
Labels: release:minor

#156 - Test release

Pull Request - State: closed - Opened by memgonzales over 1 year ago
Labels: release:minor

#155 - Test release 1

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#153 - Group callbacks + Display TFBS tooltips and statistics

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#150 - Refactor session management scheme

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#149 - Prepare for addition of TF enrichment stats

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#148 - Include only preprocessing-related dependencies in workflow image

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#146 - Implement multi-user for TF enrichment

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#145 - Display epigenomic data

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#144 - Fix footer + display of first module

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#143 - Add footer to all the pages and add Bioinfo Lab logo

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#142 - Hot fix

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#141 - Add MSU ID equivalent of gene name in text mining results

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#139 - Change logo

Pull Request - State: closed - Opened by pbong over 1 year ago

#138 - Add homepage info tiles + Outlink to MSU browser

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#136 - Refactor coexpression session variables

Pull Request - State: closed - Opened by pbong over 1 year ago

#135 - Rename session variables

Pull Request - State: closed - Opened by pbong over 1 year ago

#133 - Fix tfbs table display input

Pull Request - State: closed - Opened by pbong over 1 year ago

#132 - Fix table overflow issues

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#130 - Make transcript font size small

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#129 - Add links to coexpression table

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#128 - Program graph interactivity + Fix export issue with liftover

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#127 - Add Pfam and RAP-DB annotations to lift-over results table

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#126 - Ensure that downstream analyses use the correct Nipponbare genes

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#124 - Fix error re: links for multiple orthologs

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#123 - Revise gene statistics logic

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#122 - Follow filename convention

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#121 - Further lift-over optimizations

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#120 - Optimize computation of all genes and unique genes

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#119 - Fix display bug of igv genomic interval upon refresh

Pull Request - State: closed - Opened by pbong over 1 year ago

#118 - Start optimization of code for lift-over

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#117 - Sanitize browse loci input + Add coexpression node data div

Pull Request - State: closed - Opened by pbong over 1 year ago

#116 - Display InterPro information in lift-over results

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#114 - Skip over contigs that assembler is unable to handle

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#113 - Add disable button upon run in tfbs

Pull Request - State: closed - Opened by pbong over 1 year ago

#112 - Add bedtools installation to Dockerfile

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#111 - Limit number of text mining results

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#110 - Display only up to 100 publications

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#109 - Display only unique PubMed articles in text-mining results

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#107 - Fix genomic interval bug input error

Pull Request - State: closed - Opened by pbong over 1 year ago

#106 - Disable button if there's ongoing computation in the analysis pages

Pull Request - State: closed - Opened by pbong over 1 year ago

#105 - Add links to wiki in page description

Pull Request - State: closed - Opened by anishmss over 1 year ago

#104 - Allow fuzzy matching in text mining

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#103 - Display orthologs in Nipponbare

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#101 - Fix bug on disabling button during computation

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#100 - Disable button if ongoing computation

Pull Request - State: closed - Opened by pbong over 1 year ago

#99 - Hot Fix: Merging of branch

Pull Request - State: closed - Opened by pbong over 1 year ago

#97 - Tfbs

Pull Request - State: closed - Opened by anishmss over 1 year ago

#96 - Add write to file - text mining table

Pull Request - State: closed - Opened by pbong over 1 year ago

#92 - Refactor universal enrichment

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#90 - Implement universal enrichment function in Python

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#87 - Add family column to TF enrichment results

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#86 - Implementation of logic for inclusion of additional genes for TFBS

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#85 - Hotfix: Toggle branch condition to demo

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#83 - Disable RCRN in demo version

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#82 - Add loading affordance + change sample genes

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#81 - Hotfix for coexpression analysis

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#80 - Provide option to include additional genes in co-expression

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#78 - Fix refresh bug + Add QTARO

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#77 - Relabel s

Pull Request - State: closed - Opened by anishmss over 1 year ago

#76 - Add lift-over overall statistics and QTARO

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#75 - Add links + remove unneeded columns in results table

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#74 - Hot fix

Pull Request - State: closed - Opened by anishmss over 1 year ago

#73 - Remove .git from .dockerignore

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#72 - Disable pip's cache and specify commit hash of mcdp2

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#71 - Add demo banner and fix R dependencies in Dockerized version

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#70 - Dockerize app along with server + Add liftover summary

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#69 - Display reference-specific genes, overlapping genes, and all genes

Pull Request - State: closed - Opened by memgonzales over 1 year ago

#67 - Hot fix

Pull Request - State: closed - Opened by anishmss over 1 year ago

#66 - Input

Pull Request - State: closed - Opened by pbong over 1 year ago

#65 - Text mining

Pull Request - State: closed - Opened by anishmss over 1 year ago

#64 - Input

Pull Request - State: closed - Opened by pbong over 1 year ago

#63 - Snakemake last

Pull Request - State: closed - Opened by anishmss over 1 year ago