Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bioinfo-chru-strasbourg/howard issues and pull requests

#373 - Fix query for sort tool

Pull Request - State: closed - Opened by antonylebechec 26 days ago

#372 - Add sort tool, improve filter tool, docs #4

Pull Request - State: closed - Opened by antonylebechec 26 days ago

#371 - Add filter tool

Pull Request - State: closed - Opened by antonylebechec 27 days ago

#370 - Add interactivity

Pull Request - State: closed - Opened by antonylebechec 28 days ago

#369 - Add mode full to create annotations view

Pull Request - State: closed - Opened by antonylebechec 28 days ago

#368 - Add recreate infos

Pull Request - State: closed - Opened by antonylebechec 28 days ago

#367 - change explode infos to create view

Pull Request - State: closed - Opened by antonylebechec 30 days ago

#366 - Improve log, interactive terminal and fix tests

Pull Request - State: closed - Opened by antonylebechec 30 days ago

#364 - Add docs #4

Pull Request - State: closed - Opened by antonylebechec about 1 month ago

#362 - Add interactivity on query

Issue - State: open - Opened by antonylebechec about 1 month ago
Labels: enhancement

#361 - Add samples struct column #351

Pull Request - State: closed - Opened by antonylebechec about 1 month ago

#360 - add display modes 'markdown' and 'simple'

Pull Request - State: closed - Opened by antonylebechec about 1 month ago

#359 - Add plugin to_excel

Pull Request - State: closed - Opened by antonylebechec about 1 month ago

#358 - improve create transcripts view #256, fix extract snpeff

Pull Request - State: closed - Opened by antonylebechec about 1 month ago

#356 - Some docs #4

Pull Request - State: closed - Opened by antonylebechec about 1 month ago

#355 - Add --interactive option for all tools

Pull Request - State: closed - Opened by antonylebechec about 1 month ago

#354 - Change default param detect_type_list as True #351

Pull Request - State: closed - Opened by antonylebechec about 1 month ago

#353 - Improve annotations view

Pull Request - State: closed - Opened by antonylebechec about 1 month ago

#352 - improve annotations view #351

Pull Request - State: closed - Opened by antonylebechec about 1 month ago

#351 - Add variants annotations view

Issue - State: open - Opened by antonylebechec about 1 month ago - 1 comment
Labels: improve

#350 - Fix annotation format to table

Pull Request - State: closed - Opened by antonylebechec about 1 month ago

#349 - Incorrect vcf format after family barcode calculation

Issue - State: open - Opened by Elyanes about 1 month ago
Labels: bug

#348 - 0.12.1.1

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#346 - Fix and test explode_annotation_format

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#345 - Change version, generate docs, some minor fixes

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#343 - Fix annotation format to table

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#342 - fix memory free up for transcipts table

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#341 - remove pytest from build.yml

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#340 - Setup

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#339 - improve test for dbnsfp download

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#338 - Fix 0.12.0

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#337 - SpliceAI

Issue - State: open - Opened by JbaptisteLam about 2 months ago
Labels: enhancement

#336 - Intergenic variant

Issue - State: open - Opened by JbaptisteLam about 2 months ago
Labels: enhancement

#335 - Explode info fields too permissive

Issue - State: closed - Opened by antonylebechec about 2 months ago - 2 comments
Labels: improve

#334 - Improve dockerfile, reduce size, almalinux 8 minimal, use miniforge

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#333 - Improve docker image, reduce size

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#332 - fix tag Incorrect tag for HOWARD v0.12.0 #331

Pull Request - State: closed - Opened by antonylebechec about 2 months ago

#331 - Incorrect tag for HOWARD v0.12.0

Issue - State: open - Opened by Elyanes about 2 months ago - 1 comment

#330 - 0.12.0

Pull Request - State: closed - Opened by antonylebechec 2 months ago

#329 - Fix when INFO/tags is a flag #307

Pull Request - State: closed - Opened by antonylebechec 2 months ago

#328 - docs Docs #4

Pull Request - State: closed - Opened by antonylebechec 2 months ago

#327 - Fix empty file output #324

Pull Request - State: closed - Opened by antonylebechec 2 months ago

#326 - Fix bed annotation behavior when regions overlap #325

Pull Request - State: closed - Opened by antonylebechec 2 months ago

#325 - BED annotation with parquet method generate not ordered annotation values when regions overlap

Issue - State: closed - Opened by antonylebechec 2 months ago - 1 comment
Labels: bug, improve

#324 - Export fail when empty

Issue - State: closed - Opened by antonylebechec 2 months ago - 1 comment
Labels: improve

#323 - fix info/tags rename #307, docs #4

Pull Request - State: closed - Opened by antonylebechec 2 months ago

#321 - Error when a sample contains a special character

Issue - State: closed - Opened by antonylebechec 2 months ago - 1 comment
Labels: bug

#320 - docs #4

Pull Request - State: closed - Opened by antonylebechec 2 months ago

#318 - docs #4

Pull Request - State: closed - Opened by antonylebechec 2 months ago

#316 - Improve nomen calculation #315

Pull Request - State: closed - Opened by antonylebechec 2 months ago

#315 - Improve NOMEN calculation

Issue - State: closed - Opened by antonylebechec 2 months ago - 1 comment

#314 - improve rename info fields #307

Pull Request - State: closed - Opened by antonylebechec 2 months ago

#313 - fixes for zcat use in macos, fix tst common on get java bin

Pull Request - State: closed - Opened by antonylebechec 2 months ago

#312 - improve find nomen calculation

Pull Request - State: closed - Opened by antonylebechec 3 months ago

#311 - fix zcat os compatibility

Pull Request - State: closed - Opened by antonylebechec 3 months ago

#310 - Fix bug where remove fields #307, docs #4

Pull Request - State: closed - Opened by antonylebechec 3 months ago

#308 - Add fields to rename or remove before export #307, docs #4

Pull Request - State: closed - Opened by antonylebechec 3 months ago

#307 - Add a step to rename INFO/tags

Issue - State: closed - Opened by antonylebechec 3 months ago - 1 comment
Labels: enhancement

#306 - Add example of param in YAML format #304

Pull Request - State: closed - Opened by antonylebechec 3 months ago

#305 - Add yaml format config and param file #304, update docs #4

Pull Request - State: closed - Opened by antonylebechec 3 months ago

#304 - Use YAML instead of JSON

Issue - State: closed - Opened by antonylebechec 3 months ago - 1 comment
Labels: enhancement

#303 - fix calcultion config file in param

Pull Request - State: closed - Opened by antonylebechec 3 months ago

#300 - fix bigwig annotation info fields on header #298

Pull Request - State: closed - Opened by antonylebechec 3 months ago

#298 - Fix the missing info fields for bigwig annotation

Issue - State: closed - Opened by Elyanes 3 months ago - 1 comment

#297 - improve annotation parquet with BED format

Pull Request - State: closed - Opened by antonylebechec 4 months ago

#296 - Add BigWig annotation #295, docs #4

Pull Request - State: closed - Opened by antonylebechec 4 months ago

#295 - Add BigWig annotation

Issue - State: closed - Opened by antonylebechec 4 months ago - 1 comment
Labels: enhancement

#294 - CADD annotations from offline model (docker + snakemake)

Issue - State: open - Opened by JbaptisteLam 4 months ago
Labels: enhancement

#293 - Common func and associated test update

Pull Request - State: closed - Opened by JbaptisteLam 4 months ago

#292 - fix transcript bubble, INFO/fields into VCF, header

Pull Request - State: closed - Opened by antonylebechec 4 months ago

#291 - Update docker tools

Pull Request - State: closed - Opened by JbaptisteLam 4 months ago
Labels: enhancement

#289 - fix commons function transcripts_file_to_df

Pull Request - State: closed - Opened by antonylebechec 4 months ago

#288 - Fix commons, add plugin transcripts_check

Pull Request - State: closed - Opened by antonylebechec 4 months ago

#287 - fix user guide #4

Pull Request - State: closed - Opened by antonylebechec 4 months ago

#286 - Docs and help

Pull Request - State: closed - Opened by antonylebechec 4 months ago

#285 - Add transcripts options #256 into parameters help docs #4

Pull Request - State: closed - Opened by antonylebechec 4 months ago

#284 - fix test commons

Pull Request - State: closed - Opened by antonylebechec 4 months ago

#283 - clean docs help functions #4

Pull Request - State: closed - Opened by antonylebechec 4 months ago

#282 - Docs and help

Pull Request - State: closed - Opened by antonylebechec 4 months ago

#281 - Fixes packages versions

Pull Request - State: closed - Opened by antonylebechec 5 months ago

#279 - Log messages fixes #266

Pull Request - State: closed - Opened by antonylebechec 5 months ago

#278 - Transcript bubble view

Pull Request - State: closed - Opened by antonylebechec 5 months ago

#277 - Add trancript mapping and filter, and manage version #256

Pull Request - State: closed - Opened by antonylebechec 5 months ago

#276 - Add options to control transcripts view struct #256

Pull Request - State: closed - Opened by antonylebechec 5 months ago

#275 - Transcript bubble view

Pull Request - State: closed - Opened by antonylebechec 5 months ago

#274 - Match between Ensembl / Refseq transcript during prioritization step

Issue - State: closed - Opened by JbaptisteLam 5 months ago - 1 comment
Labels: enhancement