Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bioimage-io/spec-bioimage-io issues and pull requests

#586 - add `entry_sha256` to CollectionEntry

Pull Request - State: closed - Opened by FynnBe 10 months ago
Labels: enhancement

#585 - Fix packaging with weights format priority

Pull Request - State: closed - Opened by FynnBe 10 months ago
Labels: bug, documentation

#584 - add input axis flag `concatenable`

Pull Request - State: closed - Opened by FynnBe 10 months ago - 1 comment
Labels: documentation, enhancement

#583 - do not accept empty channel_names

Pull Request - State: closed - Opened by FynnBe 10 months ago

#582 - update architecture_sha256

Pull Request - State: closed - Opened by FynnBe 11 months ago

#581 - make sure discriminated unions don't generate too many erros

Pull Request - State: closed - Opened by FynnBe 11 months ago - 1 comment

#580 - add helper methods

Pull Request - State: closed - Opened by FynnBe 11 months ago
Labels: enhancement

#579 - halo should only be allowed for output axes with a size reference

Issue - State: closed - Opened by FynnBe 11 months ago - 4 comments

#578 - customize pdoc's doc generation

Pull Request - State: closed - Opened by FynnBe 11 months ago
Labels: ci, github_actions

#577 - Rich md output for validation summaries

Pull Request - State: closed - Opened by FynnBe 11 months ago

#576 - update unet2d_diff_output_shape's architecture_sha256

Pull Request - State: closed - Opened by FynnBe 11 months ago

#575 - Improve unions

Pull Request - State: closed - Opened by FynnBe 11 months ago

#574 - bump gh actions

Pull Request - State: closed - Opened by FynnBe 11 months ago
Labels: ci, github_actions

#573 - allow duplicate index and channel axes

Pull Request - State: closed - Opened by FynnBe 11 months ago

#572 - return already loaded description with warning

Pull Request - State: closed - Opened by FynnBe 11 months ago

#571 - fix DataDependentSize

Pull Request - State: closed - Opened by FynnBe 11 months ago
Labels: bug

#570 - restrict valid characters for resource ids

Pull Request - State: closed - Opened by FynnBe 11 months ago

#569 - add cache_path env var to settings

Pull Request - State: closed - Opened by FynnBe 11 months ago
Labels: documentation, enhancement

#568 - Binarize along axis

Pull Request - State: closed - Opened by FynnBe 11 months ago
Labels: documentation

#567 - 0.5.1

Pull Request - State: closed - Opened by FynnBe 11 months ago
Labels: documentation, enhancement

#566 - restrict name characters and name length

Pull Request - State: closed - Opened by FynnBe 11 months ago

#565 - Improve formatted summary

Pull Request - State: closed - Opened by FynnBe 11 months ago

#564 - Add DataDependentSize

Pull Request - State: closed - Opened by FynnBe 11 months ago
Labels: documentation, enhancement

#563 - Added per axis size parameter retrieval

Pull Request - State: closed - Opened by k-dominik 11 months ago - 3 comments
Labels: enhancement

#562 - fix wrong line endings in generated files

Pull Request - State: closed - Opened by FynnBe 11 months ago
Labels: bug

#561 - disallow ParameterizedSize for output axes

Pull Request - State: closed - Opened by FynnBe 11 months ago

#560 - Add function to write models directly to streams

Pull Request - State: closed - Opened by k-dominik 11 months ago
Labels: enhancement

#559 - minor improvements

Pull Request - State: closed - Opened by FynnBe 11 months ago

#558 - convert line endings to unix

Pull Request - State: closed - Opened by k-dominik 11 months ago

#557 - Optional input tensors

Pull Request - State: closed - Opened by FynnBe 11 months ago
Labels: documentation

#556 - Make AxisId inherite from str to be usable with xarray.DataArray

Pull Request - State: closed - Opened by FynnBe 11 months ago

#555 - A few minor updates

Pull Request - State: closed - Opened by FynnBe 12 months ago

#554 - patch settings.CI

Pull Request - State: closed - Opened by FynnBe 12 months ago
Labels: documentation

#553 - Attempt to fix conda build

Pull Request - State: closed - Opened by FynnBe 12 months ago
Labels: bug, documentation

#552 - Cosmetic updates

Pull Request - State: closed - Opened by FynnBe 12 months ago

#551 - Upgrade `bio-rdf-validator.imjoy.html` to use patched spec

Issue - State: closed - Opened by jmetz about 1 year ago - 2 comments
Labels: bug, enhancement

#549 - prefer torchscript in ilastik

Pull Request - State: closed - Opened by k-dominik about 1 year ago

#548 - fixed `RawNodeTransformer` to resolve names of files hosted on zenodo properly

Pull Request - State: closed - Opened by k-dominik about 1 year ago
Labels: bug

#546 - Add special support to export models usable in DeepImageJ

Pull Request - State: open - Opened by FynnBe about 1 year ago - 1 comment
Labels: enhancement

#545 - Streamlining axis size

Pull Request - State: closed - Opened by Tomaz-Vieira about 1 year ago - 1 comment

#544 - Update README.md

Pull Request - State: closed - Opened by esgomezm about 1 year ago
Labels: documentation

#541 - Poetry

Pull Request - State: open - Opened by ctr26 over 1 year ago - 10 comments
Labels: documentation, ci, github_actions

#540 - [Draft] Processing mode

Pull Request - State: closed - Opened by ctr26 over 1 year ago

#539 - Stop using the abbreviation "RDF"

Issue - State: closed - Opened by FynnBe over 1 year ago - 10 comments

#538 - Missing type in the spec

Issue - State: closed - Opened by oeway over 1 year ago - 1 comment

#537 - Zenodo public download link alternative

Issue - State: closed - Opened by qin-yu over 1 year ago - 6 comments

#536 - improve cached file name for zenodo api changes

Pull Request - State: closed - Opened by FynnBe over 1 year ago

#535 - Notebook dependencies

Issue - State: open - Opened by FynnBe over 1 year ago - 12 comments
Labels: help wanted, good first issue

#532 - Remove weights format attachments

Issue - State: closed - Opened by FynnBe over 1 year ago
Labels: breaking, removal

#531 - Fix root path issue related to new zenodo api

Pull Request - State: closed - Opened by FynnBe over 1 year ago
Labels: bug

#530 - Use EDAM ontology to improve our tags

Issue - State: open - Opened by FynnBe over 1 year ago - 2 comments

#529 - Disable url suffix checks

Pull Request - State: closed - Opened by FynnBe over 1 year ago - 2 comments
Labels: bug

#528 - digest Zenodo API update

Pull Request - State: closed - Opened by FynnBe over 1 year ago

#527 - optional inputs (for points, masks and labels)

Issue - State: closed - Opened by FynnBe over 1 year ago
Labels: good first issue

#526 - Incorporate Processing mode to axes

Issue - State: closed - Opened by FynnBe over 1 year ago - 4 comments

#525 - models with non-static outputs

Issue - State: open - Opened by esgomezm over 1 year ago - 6 comments
Labels: enhancement, ci

#524 - Undetermined order of postprocessings collides with use of `reference_tensor`

Issue - State: open - Opened by FynnBe over 1 year ago
Labels: help wanted

#523 - requests: set User-Agent to "ci" in a CI environment

Pull Request - State: closed - Opened by FynnBe over 1 year ago

#522 - Define .bioimageio.yaml suffix

Issue - State: closed - Opened by FynnBe over 1 year ago - 4 comments

#521 - Overhaul with Pydantic and format version generic 0.3 / model 0.5

Pull Request - State: closed - Opened by FynnBe over 1 year ago - 5 comments
Labels: documentation, ci, github_actions

#520 - Test inputs require a batch size of 1

Issue - State: open - Opened by JonasHell over 1 year ago - 1 comment
Labels: help wanted, good first issue, testing

#519 - Is "outputs" a required field or an optional one?

Issue - State: closed - Opened by mese79 over 1 year ago - 2 comments

#518 - Limit valid RDF type values

Issue - State: closed - Opened by FynnBe over 1 year ago - 4 comments

#517 - Improve attachments

Issue - State: closed - Opened by FynnBe over 1 year ago - 3 comments

#516 - Confusion because spec and core provide bioimageio CLI

Issue - State: closed - Opened by FynnBe over 1 year ago - 4 comments

#515 - Drop support for Python 3.7 and 3.8

Issue - State: closed - Opened by FynnBe over 1 year ago - 7 comments

#514 - Added Length validator to the String field class

Pull Request - State: closed - Opened by mese79 over 1 year ago - 3 comments

#513 - WIP Improve caching with pooch

Pull Request - State: closed - Opened by FynnBe over 1 year ago - 1 comment

#512 - Author's Name is required but accepts Empty String

Issue - State: closed - Opened by mese79 over 1 year ago - 5 comments

#511 - fixed Author & Maintainer schema(require -> required)

Pull Request - State: closed - Opened by mese79 over 1 year ago - 2 comments

#510 - fix sha value of weights.onnx

Pull Request - State: closed - Opened by FynnBe almost 2 years ago
Labels: bug

#509 - onnx model constrains input shape

Issue - State: open - Opened by FynnBe almost 2 years ago - 1 comment
Labels: help wanted, good first issue

#508 - add get_resolved_source_path

Pull Request - State: closed - Opened by FynnBe almost 2 years ago - 3 comments
Labels: enhancement

#507 - Json schemas of the specs

Issue - State: closed - Opened by ivan-ea almost 2 years ago - 1 comment
Labels: question

#506 - Require sensible minimum shapes for models

Issue - State: open - Opened by k-dominik almost 2 years ago - 7 comments
Labels: enhancement

#505 - update and set update_format docstring

Pull Request - State: closed - Opened by FynnBe almost 2 years ago

#504 - Add tracking of model RDF downloads

Pull Request - State: open - Opened by FynnBe almost 2 years ago - 8 comments
Labels: documentation, enhancement

#503 - Enforce version field values to be string

Pull Request - State: closed - Opened by FynnBe about 2 years ago
Labels: documentation

#502 - add close method to tqdm dummy

Pull Request - State: closed - Opened by FynnBe about 2 years ago
Labels: enhancement

#501 - add bioimageio_description to email field

Pull Request - State: closed - Opened by FynnBe about 2 years ago
Labels: enhancement

#500 - add `pbar=None` kwarg to `load_raw_resource_description`

Issue - State: open - Opened by FynnBe about 2 years ago
Labels: enhancement, help wanted, good first issue

#499 - Request to include pixel size/resolution in the spec

Issue - State: closed - Opened by petebankhead about 2 years ago - 3 comments

#498 - missing validation: all weight entries but one need parents

Issue - State: closed - Opened by FynnBe about 2 years ago - 1 comment

#497 - Document framework version defaults

Issue - State: closed - Opened by FynnBe about 2 years ago - 1 comment

#496 - Update CI/CD

Pull Request - State: closed - Opened by FynnBe about 2 years ago
Labels: ci, github_actions

#495 - bump to 0.4.9

Pull Request - State: closed - Opened by FynnBe about 2 years ago - 2 comments
Labels: documentation

#494 - tox fails

Issue - State: closed - Opened by FynnBe about 2 years ago

#493 - Definition of implicit tensors

Issue - State: closed - Opened by oeway about 2 years ago - 5 comments

#492 - Proposal for missing category tags warning

Pull Request - State: closed - Opened by jdeschamps about 2 years ago - 1 comment

#491 - Update to build conda package with boa

Issue - State: closed - Opened by FynnBe about 2 years ago - 1 comment

#490 - don't download anything from the internet when importing top-level stuff

Issue - State: closed - Opened by k-dominik about 2 years ago - 3 comments
Labels: question

#489 - elaborate doc for multi-file weights and improve typing with MyPy 0.991

Pull Request - State: closed - Opened by FynnBe about 2 years ago - 2 comments
Labels: ci, github_actions

#488 - Validate doc field

Pull Request - State: closed - Opened by FynnBe over 2 years ago - 1 comment

#487 - validate markdown documentation

Issue - State: open - Opened by FynnBe over 2 years ago - 5 comments

#486 - Fix processing kwargs

Pull Request - State: closed - Opened by FynnBe over 2 years ago - 1 comment
Labels: bug, documentation

#485 - Report on forward compatibility attempt in validation errors

Pull Request - State: closed - Opened by FynnBe over 2 years ago - 2 comments