Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bioforensics/MicroHapDB issues and pull requests

#156 - Future proofing

Pull Request - State: closed - Opened by standage 2 months ago - 1 comment

#155 - Replaced pooled global Aes with population average Aes

Pull Request - State: closed - Opened by standage 2 months ago

#154 - Fix count test

Pull Request - State: closed - Opened by standage 2 months ago

#152 - Can we analyse the our own data (VCF)?

Issue - State: closed - Opened by vmevada102 9 months ago - 1 comment

#151 - Include counts/observations with frequency data

Pull Request - State: closed - Opened by standage about 1 year ago

#150 - Ensure consistent MH frequencies

Pull Request - State: closed - Opened by standage about 1 year ago

#149 - Resolve updated RSIDs during database build

Pull Request - State: closed - Opened by standage about 1 year ago

#148 - Include allele counts in frequency table

Issue - State: closed - Opened by standage about 1 year ago
Labels: enhancement

#147 - Flag repetitive markers

Pull Request - State: closed - Opened by standage about 1 year ago

#146 - Issue with detail report for mh06WL-017.v1

Issue - State: closed - Opened by standage about 1 year ago
Labels: bug

#145 - Revisit versioneer

Issue - State: open - Opened by standage about 1 year ago - 1 comment

#144 - Fix bugs with offsets table

Pull Request - State: closed - Opened by standage about 1 year ago
Labels: bug

#143 - Wang 2023 90-plex

Issue - State: closed - Opened by standage about 1 year ago
Labels: datasources

#142 - Better document database build

Pull Request - State: closed - Opened by standage about 1 year ago

#141 - CLI and build cleanup

Pull Request - State: closed - Opened by standage about 1 year ago

#140 - Fencepost error with Fan 2022 data

Pull Request - State: closed - Opened by standage about 1 year ago - 2 comments

#139 - Update docs

Pull Request - State: closed - Opened by standage about 1 year ago

#138 - Updated detail view

Pull Request - State: closed - Opened by standage over 1 year ago

#137 - 191 markers from Du et al 2023

Pull Request - State: closed - Opened by standage over 1 year ago

#136 - Zhang2023

Pull Request - State: closed - Opened by standage over 1 year ago

#135 - Notebook for plotting database growth over time

Pull Request - State: closed - Opened by standage over 1 year ago

#134 - NimaGen 29-plex

Pull Request - State: closed - Opened by standage over 1 year ago

#133 - Cleanup of database build code

Pull Request - State: closed - Opened by standage over 1 year ago

#132 - Unpin faidx

Pull Request - State: closed - Opened by standage over 1 year ago

#131 - Zhu 2023: include 5+ markers along with 5- markers

Pull Request - State: closed - Opened by standage over 1 year ago - 2 comments

#130 - Exclude indels from DB build

Pull Request - State: closed - Opened by standage over 1 year ago

#129 - Issue with mh01WL-097.v2 (neé mh01SCUZJ-0012052)

Issue - State: closed - Opened by standage over 1 year ago - 2 comments
Labels: bug

#128 - Check for non-overlapping markers at build time

Pull Request - State: closed - Opened by standage over 1 year ago - 3 comments

#127 - Unpin pyfaidx

Issue - State: closed - Opened by standage over 1 year ago
Labels: bug

#126 - Locus check

Issue - State: closed - Opened by standage over 1 year ago
Labels: bug

#125 - Zhu 2023: 500 markers

Pull Request - State: closed - Opened by standage over 1 year ago - 9 comments

#124 - Support for Fasta records with multiple marker definitions

Pull Request - State: closed - Opened by standage over 1 year ago

#123 - Zhu et al. 500 MH / RMNE

Issue - State: closed - Opened by standage over 1 year ago - 1 comment
Labels: datasources

#122 - Du et al. 188 MHs

Issue - State: closed - Opened by standage over 1 year ago
Labels: datasources

#121 - Zhang 2023

Issue - State: closed - Opened by standage over 1 year ago
Labels: datasources

#120 - New summarize subcommand

Pull Request - State: closed - Opened by standage over 1 year ago
Labels: enhancement

#119 - New `nomenclature` module

Pull Request - State: closed - Opened by standage over 1 year ago
Labels: enhancement

#118 - Yu 2022: all MH groups

Pull Request - State: closed - Opened by standage over 1 year ago - 1 comment

#116 - Repetitive content check

Issue - State: closed - Opened by standage over 1 year ago
Labels: enhancement

#115 - Yu 2022

Pull Request - State: closed - Opened by standage over 1 year ago - 2 comments
Labels: datasources

#114 - Include all 1KGP population frequencies

Pull Request - State: closed - Opened by standage over 1 year ago
Labels: datasources

#113 - Database summary

Issue - State: closed - Opened by standage over 1 year ago
Labels: enhancement

#112 - Interval check for re-defined microhaps

Pull Request - State: closed - Opened by standage over 1 year ago
Labels: enhancement, datasources

#111 - Fix renaming

Pull Request - State: closed - Opened by standage over 1 year ago

#110 - Inconsistent allele representations for some markers

Issue - State: closed - Opened by standage over 1 year ago
Labels: bug

#109 - Zou 2022

Pull Request - State: closed - Opened by standage over 1 year ago

#108 - Record merged MH names

Issue - State: closed - Opened by standage over 1 year ago
Labels: enhancement

#107 - Turchi 2019

Pull Request - State: closed - Opened by standage over 1 year ago

#106 - Database backend rebuild

Pull Request - State: closed - Opened by standage almost 2 years ago

#105 - Turchi 2019

Issue - State: closed - Opened by standage almost 2 years ago - 1 comment
Labels: datasources

#104 - Staadig 2021

Issue - State: closed - Opened by standage almost 2 years ago - 2 comments
Labels: datasources

#103 - Zou et al 2022

Issue - State: closed - Opened by standage almost 2 years ago
Labels: datasources

#102 - Yu et al 2022

Issue - State: closed - Opened by standage almost 2 years ago - 2 comments
Labels: datasources

#101 - Documentation suite

Pull Request - State: closed - Opened by standage about 2 years ago - 5 comments

#100 - Fix dereferencing issues

Pull Request - State: closed - Opened by standage about 2 years ago - 1 comment

#99 - API rewrite

Pull Request - State: closed - Opened by standage about 2 years ago

#98 - Fix dereferencing issues

Pull Request - State: closed - Opened by standage about 2 years ago - 2 comments

#97 - Fan et al. 2022

Pull Request - State: closed - Opened by standage about 2 years ago - 5 comments

#96 - Wu et al. 2021

Pull Request - State: closed - Opened by standage about 2 years ago - 3 comments

#95 - Fan et al 2022

Issue - State: closed - Opened by standage about 2 years ago
Labels: datasources

#94 - Wu et al 2021

Issue - State: closed - Opened by standage about 2 years ago
Labels: datasources

#93 - Suggestion: Add `-y` when installing `pytest` in README

Issue - State: closed - Opened by danejo3 about 2 years ago - 1 comment

#92 - Add GRCh38 offsets to marker --format=offsets output

Pull Request - State: closed - Opened by standage about 2 years ago - 1 comment
Labels: enhancement

#91 - Update dbbuild code to download recommended references

Issue - State: closed - Opened by standage over 2 years ago

#90 - Kureshi 2020 Update

Pull Request - State: closed - Opened by danejo3 over 2 years ago - 10 comments

#89 - Jin 2020 Markers

Pull Request - State: closed - Opened by rnmitchell over 2 years ago - 5 comments

#88 - Slight change to build, and better documentation

Pull Request - State: closed - Opened by standage over 2 years ago - 5 comments

#87 - Created sources/sun2020

Pull Request - State: closed - Opened by RyanBerger98 almost 3 years ago - 8 comments

#86 - Jin 2020

Issue - State: closed - Opened by standage almost 3 years ago - 3 comments
Labels: datasources

#85 - Kureshi 2020

Issue - State: closed - Opened by standage almost 3 years ago - 1 comment
Labels: datasources

#84 - Sun 2020

Issue - State: closed - Opened by standage almost 3 years ago - 1 comment
Labels: datasources

#83 - Web-based view

Issue - State: open - Opened by standage almost 3 years ago
Labels: enhancement

#82 - Formatting frequencies for probgen

Pull Request - State: closed - Opened by standage almost 3 years ago

#81 - Support multiple filters, panel file

Pull Request - State: closed - Opened by standage almost 3 years ago

#80 - Add options for preparing MicroHapulator input files

Pull Request - State: closed - Opened by standage almost 3 years ago

#79 - Implement detail view for frequency queries

Issue - State: closed - Opened by standage almost 3 years ago
Labels: enhancement

#78 - Frequency query fails messily with an invalid population ID

Issue - State: closed - Opened by standage almost 3 years ago
Labels: bug

#77 - Lookup doesn't work for ALFRED population designations

Issue - State: closed - Opened by standage almost 3 years ago
Labels: bug

#76 - DIP-microhaplotype markers

Pull Request - State: closed - Opened by standage over 3 years ago
Labels: datasources

#75 - Liu 2021: DIP-microhaplotypes

Issue - State: closed - Opened by standage over 3 years ago
Labels: datasources

#74 - Implement support for pandas>=1.2

Pull Request - State: closed - Opened by standage over 3 years ago

#73 - Fix mismatch

Pull Request - State: closed - Opened by standage over 3 years ago

#72 - Allow user to extend 5' end, 3' end, or symmetrically

Pull Request - State: closed - Opened by standage over 3 years ago - 1 comment
Labels: enhancement

#71 - SNP mismatch for 4 markers

Issue - State: closed - Opened by standage over 3 years ago
Labels: bug

#70 - Pandas 1.2 causes test suite failures

Issue - State: closed - Opened by standage almost 4 years ago
Labels: bug

#69 - Pang et al 2020

Issue - State: closed - Opened by standage about 4 years ago - 1 comment
Labels: datasources

#68 - New marker collection: Gandotra et al 2020

Pull Request - State: closed - Opened by standage about 4 years ago - 2 comments
Labels: datasources

#67 - Fix marker detail view

Pull Request - State: closed - Opened by standage about 4 years ago

#66 - Marker detail fails for markers without frequency data

Issue - State: closed - Opened by standage about 4 years ago
Labels: bug

#65 - Hg37 --> hg19 in database build

Issue - State: closed - Opened by standage over 4 years ago

#64 - Add support for GRCh37 coordinates

Pull Request - State: closed - Opened by standage over 4 years ago - 3 comments
Labels: enhancement, refactoring

#63 - Update summary statistics

Pull Request - State: closed - Opened by standage over 4 years ago
Labels: enhancement

#62 - Refactor database build

Pull Request - State: closed - Opened by standage over 4 years ago
Labels: datasources, refactoring

#61 - Cosmetic updates to "marker --detail"

Pull Request - State: closed - Opened by standage over 4 years ago

#60 - Update README

Pull Request - State: closed - Opened by standage over 4 years ago - 1 comment
Labels: datasources

#59 - Calculate marker Fst

Pull Request - State: closed - Opened by standage over 4 years ago - 2 comments

#58 - Minor improvements to marker detail output

Issue - State: closed - Opened by standage over 4 years ago
Labels: enhancement

#57 - Gandotra et al. (FSI Genetics 2020)

Issue - State: closed - Opened by standage over 4 years ago
Labels: datasources