Ecosyste.ms: Issues

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GitHub / biodatageeks/sequila-native issues and pull requests

#60 - [wip] add sorted coitrees

Pull Request - State: open - Opened by pkhamutou about 1 month ago

#59 - feat:Nearest interval function

Pull Request - State: closed - Opened by mwiewior 2 months ago

#59 - feat:Nearest interval function

Pull Request - State: closed - Opened by mwiewior 2 months ago

#56 - Fix compilation issues for some x86 platforms

Issue - State: open - Opened by mwiewior 2 months ago

#55 - Polars integration with datafusion-python

Issue - State: open - Opened by mwiewior 2 months ago

#54 - Create a benchmarking notebook with other tools

Issue - State: open - Opened by mwiewior 2 months ago - 2 comments

#52 - Switch to GHA runners for everything but benchmarking

Issue - State: open - Opened by mwiewior 3 months ago

#52 - Switch to GHA runners for everything but benchmarking

Issue - State: open - Opened by mwiewior 3 months ago

#51 - feat: add rust_lapper

Pull Request - State: closed - Opened by pkhamutou 3 months ago

#50 - Benchmark guide

Pull Request - State: closed - Opened by mwiewior 3 months ago

#49 - Polars plugin

Issue - State: open - Opened by mwiewior 3 months ago
Labels: enhancement

#48 - Performance tuning

Pull Request - State: closed - Opened by mwiewior 3 months ago - 1 comment

#48 - Performance tuning

Pull Request - State: closed - Opened by mwiewior 3 months ago - 1 comment

#47 - fix projection bug

Pull Request - State: closed - Opened by pkhamutou 3 months ago
Labels: bug

#47 - fix projection bug

Pull Request - State: closed - Opened by pkhamutou 3 months ago
Labels: bug

#46 - Benchmarking dataset for VCF reader

Issue - State: open - Opened by mwiewior 3 months ago

#46 - Benchmarking dataset for VCF reader

Issue - State: open - Opened by mwiewior 3 months ago

#44 - Prepare a short instruction for local benchmarking

Issue - State: closed - Opened by mwiewior 3 months ago - 1 comment
Labels: documentation

#44 - Prepare a short instruction for local benchmarking

Issue - State: closed - Opened by mwiewior 3 months ago - 1 comment
Labels: documentation

#43 - Create a simple web-page

Issue - State: open - Opened by mwiewior 3 months ago

#43 - Create a simple web-page

Issue - State: open - Opened by mwiewior 3 months ago

#42 - Add support for </>

Pull Request - State: closed - Opened by pkhamutou 3 months ago
Labels: bug, enhancement

#42 - Add support for </>

Pull Request - State: closed - Opened by pkhamutou 3 months ago
Labels: bug, enhancement

#41 - Compare with results of AIList - some performance bottleneck for larger # of rows returned?

Issue - State: closed - Opened by mwiewior 3 months ago - 4 comments
Labels: bug, performance

#41 - Compare with results of AIList - some performance bottleneck for larger # of rows returned?

Issue - State: closed - Opened by mwiewior 3 months ago - 4 comments
Labels: bug, performance

#40 - Check if it's really faster in some cases than coitrees

Issue - State: closed - Opened by mwiewior 3 months ago
Labels: enhancement

#39 - Benchmark GHA

Pull Request - State: closed - Opened by mwiewior 3 months ago - 3 comments

#38 - Wrong results for AIList

Issue - State: open - Opened by mwiewior 3 months ago - 6 comments
Labels: bug

#37 - Flags for Intel MacOS

Pull Request - State: closed - Opened by mwiewior 3 months ago

#37 - Flags for Intel MacOS

Pull Request - State: closed - Opened by mwiewior 3 months ago

#36 - Add support for bio-info formats from exon

Issue - State: open - Opened by mwiewior 3 months ago - 1 comment

#35 - Add build side pushdown to probe side

Issue - State: open - Opened by mwiewior 3 months ago
Labels: enhancement

#34 - Add Cargo.lock

Pull Request - State: closed - Opened by pkhamutou 3 months ago

#33 - Adding new GHA runners

Pull Request - State: closed - Opened by mwiewior 3 months ago

#32 - Fixing target-cpu=native on Linux x64 and simplifying build macros

Pull Request - State: closed - Opened by mwiewior 3 months ago

#32 - Fixing target-cpu=native on Linux x64 and simplifying build macros

Pull Request - State: closed - Opened by mwiewior 3 months ago

#31 - Performance degradation between DF 39 and 43

Issue - State: open - Opened by mwiewior 3 months ago

#30 - Making output less verbose by default

Pull Request - State: closed - Opened by mwiewior 3 months ago

#30 - Making output less verbose by default

Pull Request - State: closed - Opened by mwiewior 3 months ago

#29 - Bumping DF to official 43.0.0 not revision tag

Pull Request - State: closed - Opened by mwiewior 3 months ago

#28 - feat: Upgrade Datafusion dep

Pull Request - State: closed - Opened by mwiewior 3 months ago

#28 - feat: Upgrade Datafusion dep

Pull Request - State: closed - Opened by mwiewior 3 months ago

#27 - Fix clippy "unexpected `cfg` condition value" warning

Issue - State: closed - Opened by pkhamutou 3 months ago - 1 comment
Labels: enhancement

#26 - update DataFusion to v42.2.0

Pull Request - State: closed - Opened by pkhamutou 3 months ago

#25 - add -f support

Pull Request - State: closed - Opened by pkhamutou 3 months ago

#24 - fix: Running on huge-c10m25

Pull Request - State: closed - Opened by mwiewior 3 months ago

#23 - feat: Using a self-hosted runner

Pull Request - State: closed - Opened by mwiewior 3 months ago

#22 - Add clippy

Issue - State: closed - Opened by mwiewior 4 months ago - 2 comments

#20 - Add docs to Native and Comet

Issue - State: open - Opened by mwiewior 4 months ago

#18 - Add support for -f for cli

Issue - State: closed - Opened by mwiewior 4 months ago

#17 - Add support for < or >

Issue - State: closed - Opened by mwiewior 4 months ago

#16 - Upgrade DataFusion to v42.2.0

Issue - State: closed - Opened by mwiewior 4 months ago - 1 comment

#15 - Compile on MacOS and Linux Issue

Issue - State: closed - Opened by mwiewior 4 months ago - 1 comment

#14 - Release sequila-native to cargo via GA

Issue - State: open - Opened by mwiewior 4 months ago

#13 - Add GA benchmarks

Issue - State: closed - Opened by mwiewior 4 months ago

#12 - Umbrella issue for the paper release

Issue - State: open - Opened by mwiewior 4 months ago

#11 - Fix reference

Pull Request - State: closed - Opened by mwiewior 5 months ago

#10 - refactor stream processing and add logging

Pull Request - State: closed - Opened by pkhamutou 5 months ago

#9 - detect range join when there is not equi condition

Pull Request - State: closed - Opened by pkhamutou 6 months ago

#8 - apply clippy

Pull Request - State: closed - Opened by pkhamutou 6 months ago

#7 - add AIList algorithm

Pull Request - State: closed - Opened by pkhamutou 7 months ago

#6 - Use rust bio

Pull Request - State: closed - Opened by pkhamutou 7 months ago

#5 - fix: move files

Pull Request - State: closed - Opened by pkhamutou 7 months ago

#4 - Implement interval join

Pull Request - State: closed - Opened by pkhamutou 7 months ago

#3 - feat: add is_range_join check

Pull Request - State: closed - Opened by pkhamutou 11 months ago

#2 - CI/CD improvements

Issue - State: open - Opened by mwiewior about 1 year ago
Labels: enhancement

#1 - Feat/sequila native init

Pull Request - State: closed - Opened by pkhamutou about 1 year ago